hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20080501/iprscan-20080501-18081727/chunk_1/iprscan-20080501-18081727.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA1127 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00181 90.5 2e-22 6 SM00179 18.0 0.0099 2 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00181 1/6 2 38 .. 1 32 [] 12.7 19 SM00179 1/2 39 70 .. 1 34 [] 7.9 0.17 SM00181 2/6 41 70 .. 1 32 [] 20.8 0.19 SM00181 3/6 75 105 .. 1 32 [] 11.5 25 SM00181 4/6 108 136 .. 1 32 [] 14.7 13 SM00181 5/6 139 167 .. 1 32 [] 13.4 17 SM00179 2/2 176 211 .. 1 34 [] 10.0 0.095 SM00181 6/6 179 211 .. 1 32 [] 17.5 1.9 Alignments of top-scoring domains: SM00181: domain 1 of 6, from 2 to 38: score 12.7, E = 19 *->eCa.........pCsnGgtEqnGtCisytC.CpgpGytg.rCe<-* eC+ + ++ ++ C+ + G Ci C C +Gy+g++Ce KIAA1127 2 ECDvpmnqcidpSCGGH-----GSCIDGNCvCS-AGYKGeHCE 38 SM00179: domain 1 of 2, from 39 to 70: score 7.9, E = 0.17 *->DiDEC...pCqnGGptgtCiN.vGSYrC.CppGyt.rnCe<-* +D C ++ C+ +G +C+N++ C C pG+ + nCe KIAA1127 39 EVD-CldpTCSSHG---VCVNgE----ClCSPGWGgLNCE 70 SM00181: domain 2 of 6, from 41 to 70: score 20.8, E = 0.19 *->eCa..pCsnGgtEqnGtCisytC.CpgpGytg.rCe<-* +C+++ Cs + G+C+ +C C pG+ g +Ce KIAA1127 41 DCLdpTCSSH-----GVCVNGEClCS-PGWGGlNCE 70 SM00181: domain 3 of 6, from 75 to 105: score 11.5, E = 25 *->eCa.pCsnGgtEqnGtCi..sytC.CpgpGytg.rCe<-* C + Cs + Gt ++++ C+C p ++g+ C KIAA1127 75 QCPdQCSGH-----GTYLpdTGLCsCD-PNWMGpDCS 105 SM00181: domain 4 of 6, from 108 to 136: score 14.7, E = 13 *->eCa.pCsnGgtEqnGtCisytC.CpgpGytg.rCe<-* C+ +C+ + G+Ci+ C+C +G+tg C KIAA1127 108 VCSvDCGTH-----GVCIGGACrCE-EGWTGaACD 136 SM00181: domain 5 of 6, from 139 to 167: score 13.4, E = 17 *->eCa.pCsnGgtEqnGtCisytC.CpgpGytg.rCe<-* C++ C ++ GtC +C+C+ +G+ g++C KIAA1127 139 VCHpRCIEH-----GTCKDGKCeCR-EGWNGeHCT 167 SM00179: domain 2 of 2, from 176 to 211: score 10.0, E = 0.095 *->DiDEC..pCqnGGptgtCiN.vGSYrC.CppGyt.rnCe<-* D C+++C +G +C+ + +S +C C+ G++++ C KIAA1127 176 ETDGCpdLCNGNG---RCTLgQNSWQCvCQTGWRgPGCN 211 SM00181: domain 6 of 6, from 179 to 211: score 17.5, E = 1.9 *->eCa.pCsnGgtEqnGtCi....sytC.CpgpGytg.rCe<-* C + C + G+C+ + +s++C C+ G++g+ C KIAA1127 179 GCPdLCNGN-----GRCTlgqnSWQCvCQ-TGWRGpGCN 211 //