hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/TIGRFAMs_HMM.LIB.bin Sequence file: /db/iprscan/tmp/20080501/iprscan-20080501-18081727/chunk_1/iprscan-20080501-18081727.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA1127 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- TIGR01643 YD_repeat_2x: YD repeat (two copies) 79.4 3.7e-21 7 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- TIGR01643 1/7 989 1030 .. 1 42 [] 11.0 0.53 TIGR01643 2/7 1053 1094 .. 1 42 [] 23.3 0.00028 TIGR01643 3/7 1265 1305 .. 1 42 [] 12.7 0.23 TIGR01643 5/7 1549 1595 .. 1 42 [] 12.2 0.31 TIGR01643 6/7 1650 1692 .. 1 42 [] 13.4 0.17 Alignments of top-scoring domains: TIGR01643: domain 1 of 7, from 989 to 1030: score 11.0, E = 0.53 *->ydaagrllgstdpdgtttrytydaagrlveetdpdggstsle<-* y+++++++ +d +g+ + d++g +pd+++ l+ KIAA1127 989 YSTDNDVTELIDNNGNSLKIRRDSSGMPRHLLMPDNQIITLT 1030 TIGR01643: domain 2 of 7, from 1053 to 1094: score 23.3, E = 0.00028 *->ydaagrllgstdpdgtttrytydaagrlveetdpdggstsle<-* ++ g l++ d+ g+tt y+yd +grl+ +t+p g +tsl+ KIAA1127 1053 DGNTGLLATKSDETGWTTFYDYDHEGRLTNVTRPTGVVTSLH 1094 TIGR01643: domain 3 of 7, from 1265 to 1305: score 12.7, E = 0.23 *->ydaagrllgstdpdgtttrytydaagrlveetdpdggstsle<-* y +grl+g r + d +gr+v++ +dg+++s+ KIAA1127 1265 YFFNGRLAGLQRGAM-SERTDIDKQGRIVSRMFADGKVWSYS 1305 TIGR01643: domain 5 of 7, from 1549 to 1595: score 12.2, E = 0.31 *->ydaagrllgstdpdg.....tttrytydaagrlveetdpdggstsle yd gr++ g+ ++t ++y+yd+ g+l ++ +d+ ++++ KIAA1127 1549 YDSMGRVIKRELKLGpyantTKYTYDYDGDGQLQSVAVNDRPTWRYS 1595 <-* KIAA1127 - - TIGR01643: domain 6 of 7, from 1650 to 1692: score 13.4, E = 0.17 *->ydaagrll.gstdpdgtttrytydaagrlveetdpdggstsle<-* y+ g l+++++ ++g+ ++y yd+ gr+ + ++ g+ ++ KIAA1127 1650 YNSKGLLTrAYNKASGWSVQYRYDGVGRRASYKTNLGHHLQYF 1692 //