# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/hg03213.fasta.huge -Q ../query/KIAA1128.ptfa ./tmplib.24314 2
FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 KIAA1128, 588 aa
 vs ./tmplib.24314 library

1986917 residues in  2037 sequences
  Expectation_n fit: rho(ln(x))= 6.5018+/-0.00612; mu= 7.9132+/- 0.416
 mean_var=142.3669+/-33.253, 0's: 0 Z-trim: 2  B-trim: 4 in 1/39
 Lambda= 0.107490

FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 37, opt: 25, open/ext: -10/-2, width:  16
The best scores are:                                      opt bits E(2037)
KIAA1680  ( 902 res)   fh23414                     ( 902)  185 40.5 0.00072


>>KIAA1680  ( 902 res)   fh23414                          (902 aa)
 initn: 329 init1: 146 opt: 185  Z-score: 161.3  bits: 40.5 E(): 0.00072
Smith-Waterman score: 338;  25.678% identity (56.159% similar) in 479 aa overlap (122-585:328-781)

             100       110       120       130       140       150 
KIAA11 GNKNSPADTCVEEDATVLAKDRAANKDQELIENESYRTKNNQTMKHDAKMRYLSDDVDDI
                                     .:..    .:.      :... .  .. ..
KIAA16 MSLNSAAVTKTTTELTGTVPCAIMSPGKYRLEGQCSTESNSLPETSAANQKEVLLQIAEL
       300       310       320       330       340       350       

             160       170       180         190       200         
KIAA11 SLSSLSSSDKNDLSEDFSDDFIDIEDSNRTRIT--PEEMSLKEEKHENGPPQDMFDSPKE
         .:.: :..:  ...  .. : .....    :  :..... :. :.    .     :  
KIAA16 PATSVSHSESNLPADSEREENIGLQNGETMLGTNSPRKLGFYEQ-HKAIAEHVKGIHPIS
       360       370       380       390       400        410      

     210       220        230       240       250       260        
KIAA11 NEKAFSKTDEWIDISVSDR-SECTKHTSGNNLVSPDTDYRAGSSFELSPSDSSDGTYMWD
       . : .  .    :  . .. :.  . . .. :.:  . .: :  .:    .::.::   .
KIAA16 DSKIIPTSG---DHHIFNKTSHGYEANPAKVLASSLSPFREGRFIERRLRSSSEGTAGSS
        420          430       440       450       460       470   

      270        280              290       300       310       320
KIAA11 EEGLEPI-GNVHPVGSYE-------SSEMNSIDILNNLESCDLEDDDLMLDVDLPEDAPL
       .  :.:  ::.. :.: .       ::.:::.:.:::: ::.:..::::::... :.  :
KIAA16 RMILKPKDGNIEEVNSLRKQRAGSSSSKMNSLDVLNNLGSCELDEDDLMLDLEFLEEQSL
           480       490       500       510       520       530   

                330       340       350       360       370        
KIAA11 ENVEC--DNMNRFDRPDRNVRQPQEGFWKRPPQRWSGQEHYHLSHPDHYHHHGKSDLSRG
       .   :  :...        :  :.:     :  . . .:. .. .:.. .   :  :.. 
KIAA16 HPSVCREDSYHSVVSCAAVVLTPME-----PMIEMKKREEPEFPEPSKQNLSLK--LTKD
           540       550            560       570       580        

      380       390       400       410       420       430        
KIAA11 SPYRESPLGHFESYGGMPFFQAQKMFVDVPENTVILDEMTLRHMVQDCTAVKTQLLKLKR
          .:.  .:.  . . :  .:.  .  : ::  : : . .: :.:::::::: :::.::
KIAA16 VD-QEARCSHISRMPNSP--SADWPLQGVEENGGI-DSLPFRLMLQDCTAVKTLLLKMKR
         590       600         610        620       630       640  

      440       450       460       470       480       490        
KIAA11 LLHQHDGSGSLHDIQLSLPSSPEPEDGDKVYKNEDLLNEIKQLKDEIKKKDEKIQLLELQ
       .: :.... :  .   ::: ::  :  . :  .. . .: ..:: ..:.::: :. :. .
KIAA16 VL-QESADMSPASSTTSLPVSPLTE--EPVPFKDIMKDECSMLKLQLKEKDELISQLQEE
             650       660         670       680       690         

      500        510       520       530       540       550       
KIAA11 LA-TQHICHQKCKEEKCTYADKYTQTPWRRIPGGYSAPSFSPWQGSFQGIPRT-VPPHRR
       :. ..:.  ::    .   .:: :::       : .   .   ::. ..  :. .  .  
KIAA16 LGKVRHL--QKAFASR---VDKSTQTELL-CYDGLNLKRLETVQGGREATYRNRIVSQNL
     700         710          720        730       740       750   

        560       570       580                                    
KIAA11 QTSSTTAFQQPSQTHRSHPGKTNKATTYRGPQ                            
       .: .  :.. :..  : . . ..... :.                               
KIAA16 STRDRKAIHTPTED-RFRYSAADQTSPYKNKTCQLPSLCLSNFLKDKELAEVIKHSRGTY
           760        770       780       790       800       810  




588 residues in 1 query   sequences
1986917 residues in 2037 library sequences
 Scomplib [34.26]
 start: Thu Dec 18 15:10:20 2008 done: Thu Dec 18 15:10:20 2008
 Total Scan time:  0.490 Total Display time:  0.020

Function used was FASTA [version 34.26.5 April 26, 2007]