hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080501/iprscan-20080501-18113925/chunk_1/iprscan-20080501-18113925.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA1129 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF01344.15.ls Kelch motif 356.7 3.6e-104 6 PF01344.15.fs Kelch motif 344.6 1.5e-100 6 PF07707.5.ls BTB And C-terminal Kelch 193.0 6.6e-55 1 PF07707.5.fs BTB And C-terminal Kelch 191.0 2.6e-54 1 PF00651.21.ls BTB/POZ domain 147.3 3.9e-41 1 PF00651.21.fs BTB/POZ domain 145.5 1.3e-40 1 PF07646.5.ls Kelch motif 128.7 1.5e-35 6 PF07646.5.fs Kelch motif 120.2 5.3e-33 6 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00651.21.fs 1/1 78 185 .. 1 135 [] 145.5 1.3e-40 PF00651.21.ls 1/1 78 185 .. 1 135 [] 147.3 3.9e-41 PF07707.5.ls 1/1 190 292 .. 1 103 [] 193.0 6.6e-55 PF07707.5.fs 1/1 190 292 .. 1 103 [] 191.0 2.6e-54 PF01344.15.ls 1/6 328 372 .. 1 45 [] 31.6 2.6e-06 PF01344.15.fs 1/6 328 372 .. 1 45 [] 29.6 1.4e-07 PF01344.15.fs 2/6 374 419 .. 1 45 [] 56.3 3.5e-15 PF07646.5.ls 2/6 374 419 .. 1 54 [] 22.5 0.0014 PF07646.5.fs 2/6 374 419 .. 1 54 [] 20.6 9.4e-05 PF01344.15.ls 2/6 374 419 .. 1 45 [] 58.3 2.3e-14 PF01344.15.fs 3/6 421 466 .. 1 45 [] 61.0 1.6e-16 PF07646.5.ls 3/6 421 466 .. 1 54 [] 16.9 0.066 PF07646.5.fs 3/6 421 466 .. 1 54 [] 15.1 0.0031 PF01344.15.ls 3/6 421 466 .. 1 45 [] 63.1 8.6e-16 PF07646.5.ls 4/6 468 515 .. 1 54 [] 29.3 1.2e-05 PF01344.15.fs 4/6 468 515 .. 1 45 [] 70.8 2.8e-19 PF01344.15.ls 4/6 468 515 .. 1 45 [] 72.8 1e-18 PF07646.5.fs 4/6 468 515 .. 1 54 [] 27.4 1.4e-06 PF01344.15.fs 5/6 517 562 .. 1 45 [] 64.2 2.1e-17 PF07646.5.fs 5/6 517 562 .. 1 54 [] 31.3 1.2e-07 PF01344.15.ls 5/6 517 562 .. 1 45 [] 66.2 9.8e-17 PF07646.5.ls 5/6 517 562 .. 1 54 [] 33.2 8.7e-07 PF07646.5.fs 6/6 564 609 .. 1 54 [] 19.5 0.00019 PF01344.15.fs 6/6 564 609 .. 1 45 [] 62.7 5.5e-17 PF01344.15.ls 6/6 564 609 .. 1 45 [] 64.7 2.8e-16 PF07646.5.ls 6/6 564 609 .. 1 54 [] 21.4 0.0031 Alignments of top-scoring domains: PF00651.21.fs: domain 1 of 1, from 78 to 185: score 145.5, E = 1.3e-40 *->lnelrkqgelcDVtLvvgdgsgrydvgkkfkAHKavLaacSpYFkal +nelr + lcDV +v++d +++ AH++vLaacSpYF a+ KIAA1129 78 MNELRSKQLLCDVMIVAED--------VEIEAHRVVLAACSPYFCAM 116 FtgqfkesiteeessvsseieledvspedfealLefiYtgelsitqdqks Ftg+ ++es+ ie++dv+ +++ l+++iYt+e+++t KIAA1129 117 FTGD------MSESKAK-KIEIKDVDGQTLSKLIDYIYTAEIEVT----- 154 PssckseenvedlLaaAadllqipslvdaCeefliksl<-* eenv+ lL aA +llq+ ++++ C++fl+ +l KIAA1129 155 ------EENVQVLLPAA-SLLQLMDVRQNCCDFLQSQL 185 PF00651.21.ls: domain 1 of 1, from 78 to 185: score 147.3, E = 3.9e-41 *->lnelrkqgelcDVtLvvgdgsgrydvgkkfkAHKavLaacSpYFkal +nelr + lcDV +v++d +++ AH++vLaacSpYF a+ KIAA1129 78 MNELRSKQLLCDVMIVAED--------VEIEAHRVVLAACSPYFCAM 116 FtgqfkesiteeessvsseieledvspedfealLefiYtgelsitqdqks Ftg+ ++es+ ie++dv+ +++ l+++iYt+e+++t KIAA1129 117 FTGD------MSESKAK-KIEIKDVDGQTLSKLIDYIYTAEIEVT----- 154 PssckseenvedlLaaAadllqipslvdaCeefliksl<-* eenv+ lL aA +llq+ ++++ C++fl+ +l KIAA1129 155 ------EENVQVLLPAA-SLLQLMDVRQNCCDFLQSQL 185 PF07707.5.ls: domain 1 of 1, from 190 to 292: score 193.0, E = 6.6e-55 *->CLgIrrfAdaygceeLaeaAdrfilqnFleVakseEFlqLskeqLie CLgIr fAd + c++L+++A+++++q+F+eV+ eEFl+Ls++q+++ KIAA1129 190 CLGIRAFADVHTCTDLLQQANAYAEQHFPEVMLGEEFLSLSLDQVCS 236 lLssDeLnVpsEeeVfeAvmrWvkhdvenRkkhlpeLLshVRLpLLspky l+ssD+L+V sEe+VfeAv++W+++++e+R +h+++L++hVRLpLL+++y KIAA1129 237 LISSDKLTVSSEEKVFEAVISWINYEKETRLEHMAKLMEHVRLPLLPRDY 286 Llevve<-* L+++ve KIAA1129 287 LVQTVE 292 PF07707.5.fs: domain 1 of 1, from 190 to 292: score 191.0, E = 2.6e-54 *->CLgIrrfAdaygceeLaeaAdrfilqnFleVakseEFlqLskeqLie CLgIr fAd + c++L+++A+++++q+F+eV+ eEFl+Ls++q+++ KIAA1129 190 CLGIRAFADVHTCTDLLQQANAYAEQHFPEVMLGEEFLSLSLDQVCS 236 lLssDeLnVpsEeeVfeAvmrWvkhdvenRkkhlpeLLshVRLpLLspky l+ssD+L+V sEe+VfeAv++W+++++e+R +h+++L++hVRLpLL+++y KIAA1129 237 LISSDKLTVSSEEKVFEAVISWINYEKETRLEHMAKLMEHVRLPLLPRDY 286 Llevve<-* L+++ve KIAA1129 287 LVQTVE 292 PF01344.15.ls: domain 1 of 6, from 328 to 372: score 31.6, E = 2.6e-06 *->pRsgagvvvldgkiYviGGydgqslnsvevYDpetntWtklpsmp<- + + v+l ++ v+GG+ + + +sve+YD e+++W +++++p KIAA1129 328 RTKPRTPVSLPKVMIVVGGQAPKAIRSVECYDFEEDRWDQIAELP 372 * KIAA1129 - - PF01344.15.fs: domain 1 of 6, from 328 to 372: score 29.6, E = 1.4e-07 *->pRsgagvvvldgkiYviGGydgqslnsvevYDpetntWtklpsmp<- + + v+l ++ v+GG+ + + +sve+YD e+++W +++++p KIAA1129 328 RTKPRTPVSLPKVMIVVGGQAPKAIRSVECYDFEEDRWDQIAELP 372 * KIAA1129 - - PF01344.15.fs: domain 2 of 6, from 374 to 419: score 56.3, E = 3.5e-15 *->pRsgagvvvldgkiYviGGydg.qslnsvevYDpetntWtklpsmp< +R++agvv + g++Y++GG++g+ ++++v+vYD ++++Wt ++sm+ KIAA1129 374 RRCRAGVVFMAGHVYAVGGFNGsLRVRTVDVYDGVKDQWTSIASMQ 419 -* KIAA1129 - - PF07646.5.ls: domain 2 of 6, from 374 to 419: score 22.5, E = 0.0014 *->pryphasvvpggklyvvGGsfkgnrgtgngdesssdllvldpetnvW +r++ +v + g +y vGG+ ng+++ +++ v+d + +W KIAA1129 374 RRCRAGVVFMAGHVYAVGGF--------NGSLRVRTVDVYDGVKDQW 412 eklpalp<-* + ++++ KIAA1129 413 TSIASMQ 419 PF07646.5.fs: domain 2 of 6, from 374 to 419: score 20.6, E = 9.4e-05 *->pryphasvvpggklyvvGGsfkgnrgtgngdesssdllvldpetnvW +r++ +v + g +y vGG+ ng+++ +++ v+d + +W KIAA1129 374 RRCRAGVVFMAGHVYAVGGF--------NGSLRVRTVDVYDGVKDQW 412 eklpalp<-* + ++++ KIAA1129 413 TSIASMQ 419 PF01344.15.ls: domain 2 of 6, from 374 to 419: score 58.3, E = 2.3e-14 *->pRsgagvvvldgkiYviGGydg.qslnsvevYDpetntWtklpsmp< +R++agvv + g++Y++GG++g+ ++++v+vYD ++++Wt ++sm+ KIAA1129 374 RRCRAGVVFMAGHVYAVGGFNGsLRVRTVDVYDGVKDQWTSIASMQ 419 -* KIAA1129 - - PF01344.15.fs: domain 3 of 6, from 421 to 466: score 61.0, E = 1.6e-16 *->pRsgagvvvldgkiYviGGydg.qslnsvevYDpetntWtklpsmp< +Rs g++vl++++Y++GG+dg++ l sve+Y+ +tn+W ++++m+ KIAA1129 421 RRSTLGAAVLNDLLYAVGGFDGsTGLASVEAYSYKTNEWFFVAPMN 466 -* KIAA1129 - - PF07646.5.ls: domain 3 of 6, from 421 to 466: score 16.9, E = 0.066 *->pryphasvvpggklyvvGGsfkgnrgtgngdesssdllvldpetnvW +r+ ++v+++ ly vGG+ +g+ + ++ + +tn+W KIAA1129 421 RRSTLGAAVLNDLLYAVGGF--------DGSTGLASVEAYSYKTNEW 459 eklpalp<-* ++++ KIAA1129 460 FFVAPMN 466 PF07646.5.fs: domain 3 of 6, from 421 to 466: score 15.1, E = 0.0031 *->pryphasvvpggklyvvGGsfkgnrgtgngdesssdllvldpetnvW +r+ ++v+++ ly vGG+ +g+ + ++ + +tn+W KIAA1129 421 RRSTLGAAVLNDLLYAVGGF--------DGSTGLASVEAYSYKTNEW 459 eklpalp<-* ++++ KIAA1129 460 FFVAPMN 466 PF01344.15.ls: domain 3 of 6, from 421 to 466: score 63.1, E = 8.6e-16 *->pRsgagvvvldgkiYviGGydg.qslnsvevYDpetntWtklpsmp< +Rs g++vl++++Y++GG+dg++ l sve+Y+ +tn+W ++++m+ KIAA1129 421 RRSTLGAAVLNDLLYAVGGFDGsTGLASVEAYSYKTNEWFFVAPMN 466 -* KIAA1129 - - PF07646.5.ls: domain 4 of 6, from 468 to 515: score 29.3, E = 1.2e-05 *->pryphasvvpggklyvvGGsfkgnrgtgngdesssdllvldpetnvW +r+++ + v++gkly vGG+ +g +s++ ++p tn+W KIAA1129 468 RRSSVGVGVVEGKLYAVGGY------DGASRQCLSTVEQYNPATNEW 508 eklpalp<-* +++++ KIAA1129 509 IYVADMS 515 PF01344.15.fs: domain 4 of 6, from 468 to 515: score 70.8, E = 2.8e-19 *->pRsgagvvvldgkiYviGGydg...qslnsvevYDpetntWtklpsm +Rs++gv v++gk+Y++GGydg ++q+l++ve Y+p tn+W ++++m KIAA1129 468 RRSSVGVGVVEGKLYAVGGYDGasrQCLSTVEQYNPATNEWIYVADM 514 p<-* + KIAA1129 515 S 515 PF01344.15.ls: domain 4 of 6, from 468 to 515: score 72.8, E = 1e-18 *->pRsgagvvvldgkiYviGGydg...qslnsvevYDpetntWtklpsm +Rs++gv v++gk+Y++GGydg ++q+l++ve Y+p tn+W ++++m KIAA1129 468 RRSSVGVGVVEGKLYAVGGYDGasrQCLSTVEQYNPATNEWIYVADM 514 p<-* + KIAA1129 515 S 515 PF07646.5.fs: domain 4 of 6, from 468 to 515: score 27.4, E = 1.4e-06 *->pryphasvvpggklyvvGGsfkgnrgtgngdesssdllvldpetnvW +r+++ + v++gkly vGG+ +g +s++ ++p tn+W KIAA1129 468 RRSSVGVGVVEGKLYAVGGY------DGASRQCLSTVEQYNPATNEW 508 eklpalp<-* +++++ KIAA1129 509 IYVADMS 515 PF01344.15.fs: domain 5 of 6, from 517 to 562: score 64.2, E = 2.1e-17 *->pRsgagvvvldgkiYviGGydg.qslnsvevYDpetntWtklpsmp< +Rsgagv vl g++Y++GG+dg+ +svevYDp tntW+++++m+ KIAA1129 517 RRSGAGVGVLSGQLYATGGHDGpLVRKSVEVYDPGTNTWKQVADMN 562 -* KIAA1129 - - PF07646.5.fs: domain 5 of 6, from 517 to 562: score 31.3, E = 1.2e-07 *->pryphasvvpggklyvvGGsfkgnrgtgngdesssdllvldpetnvW +r++ + v+ g+ly GG+ +g+++ ++ v+dp tn+W KIAA1129 517 RRSGAGVGVLSGQLYATGGH--------DGPLVRKSVEVYDPGTNTW 555 eklpalp<-* + ++++ KIAA1129 556 KQVADMN 562 PF01344.15.ls: domain 5 of 6, from 517 to 562: score 66.2, E = 9.8e-17 *->pRsgagvvvldgkiYviGGydg.qslnsvevYDpetntWtklpsmp< +Rsgagv vl g++Y++GG+dg+ +svevYDp tntW+++++m+ KIAA1129 517 RRSGAGVGVLSGQLYATGGHDGpLVRKSVEVYDPGTNTWKQVADMN 562 -* KIAA1129 - - PF07646.5.ls: domain 5 of 6, from 517 to 562: score 33.2, E = 8.7e-07 *->pryphasvvpggklyvvGGsfkgnrgtgngdesssdllvldpetnvW +r++ + v+ g+ly GG+ +g+++ ++ v+dp tn+W KIAA1129 517 RRSGAGVGVLSGQLYATGGH--------DGPLVRKSVEVYDPGTNTW 555 eklpalp<-* + ++++ KIAA1129 556 KQVADMN 562 PF07646.5.fs: domain 6 of 6, from 564 to 609: score 19.5, E = 0.00019 *->pryphasvvpggklyvvGGsfkgnrgtgngdesssdllvldpetnvW +r + ++ ++g lyvvGG +g++ + ++ +++p t +W KIAA1129 564 CRRNAGVCAVNGLLYVVGGD--------DGSCNLASVEYYNPVTDKW 602 eklpalp<-* + lp KIAA1129 603 TLLPTNM 609 PF01344.15.fs: domain 6 of 6, from 564 to 609: score 62.7, E = 5.5e-17 *->pRsgagvvvldgkiYviGGydg.qslnsvevYDpetntWtklpsmp< +R++agv++++g++Yv+GG dg+ l sve+Y+p+t++Wt lp+ + KIAA1129 564 CRRNAGVCAVNGLLYVVGGDDGsCNLASVEYYNPVTDKWTLLPTNM 609 -* KIAA1129 - - PF01344.15.ls: domain 6 of 6, from 564 to 609: score 64.7, E = 2.8e-16 *->pRsgagvvvldgkiYviGGydg.qslnsvevYDpetntWtklpsmp< +R++agv++++g++Yv+GG dg+ l sve+Y+p+t++Wt lp+ + KIAA1129 564 CRRNAGVCAVNGLLYVVGGDDGsCNLASVEYYNPVTDKWTLLPTNM 609 -* KIAA1129 - - PF07646.5.ls: domain 6 of 6, from 564 to 609: score 21.4, E = 0.0031 *->pryphasvvpggklyvvGGsfkgnrgtgngdesssdllvldpetnvW +r + ++ ++g lyvvGG +g++ + ++ +++p t +W KIAA1129 564 CRRNAGVCAVNGLLYVVGGD--------DGSCNLASVEYYNPVTDKW 602 eklpalp<-* + lp KIAA1129 603 TLLPTNM 609 //