HUGE

Gene/Protein Characteristic Table for KIAA1130

Link to : Rouge \| GTOP \| SWISS-PROT/TrEMBL \| GeneCards\| RefDIC
Features : DNA sequence \| Protein sequence \| Expression \| Mapping

Product ID :	ORK00745
Accession No. :	AB032956
Description :	Putative polypeptide N-acetylgalactosaminyltransferase-like protein 1.
HUGO Gene Name :	UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 1 (GALNTL1)
Clone Name :	hh00715 [Vector Info]
Flexi ORF Clone :	pF1KSDA1130
Source :	Human adult brain

Features of the cloned DNA sequence	Description

Length: 5548 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis) for :
cloned DNA seq.
Warning for N-terminal truncation:
NO

Warning for coding interruption:
NO

Integrity of 3' end

Length of 3'UTR 3802 bp

Genome contig ID gi51511730f_68696644
PolyA signal sequence
(AATAAA,-23)
+----*----+----*----+----*----+----
ACACACACCTGGAATAAAACCACTTCTTACATGTC
Flanking genome sequence
(194294 - 194343)
----+----*----+----*----+----*----+----*----+----*
CACATGCACCAGCGCCTTCCTTTCTGCCTCCAGGCCTAGCCCTTCAGCAC

Ensembl ContigView (Add our DAS server as a DAS source)

Chr f/r start end exon identity class

ContigView(URL based/DAS) 14 f 68796644 68890936 15 100.0 Perfect prediction

Features of the protein sequence	Description

Length: 575 aa

Result of homology search against nr database (FASTA output, Multiple alignment)

Entry	ID%	Protein	Source
XP_522885	100.0	UDP-N-acetyl-al...	Pan troglodytes
BAD93178	100.0	UDP-N-acetyl-al...	Homo sapiens
XP_001104403	98.0	UDP-N-acetyl-al...	Macaca mulatta
Q8N428	100.0	Putative polype...	Homo sapiens
AAH98578	99.8	UDP-N-acetyl-al...	Homo sapiens

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of homology search against other HUGE database (FASTA output, Multiple alignment)

Entry	Exp	ID%	HUGE_ID
AB067505	1.5e-69	44.6	KIAA1918

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of motif / domain search (InterProScan and SOSUI)

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Result of InterProScan

Search method interpro_ID From To Entry Definition

HMMPfam IPR001173 159 341 PF00535 Glycosyl transferase

IPR000772 464 546 PF00652 Ricin B lectin

ProfileScan IPR000772 474 540 PS50231 Ricin B lectin

Search method	interpro_ID	From	To	Entry	Definition
HMMPfam	IPR001173	159	341	PF00535	Glycosyl transferase
IPR000772	464	546	PF00652	Ricin B lectin
ProfileScan	IPR000772	474	540	PS50231	Ricin B lectin

Prediction of transmembrane (TM) segments

Method No. N terminal transmembrane region C terminal type length

SOSUI2 1 38 RANAIAILTVAWILGTFYYLWQD 60 PRIMARY 23

Method	No.	N terminal	transmembrane region	C terminal	type	length
SOSUI2	1	38	RANAIAILTVAWILGTFYYLWQD	60	PRIMARY	23

Expression profile	Description

: RT-PCR-ELISA Description
: Experimental conditions

Primer_f
: ATCCTGGGCACTTTCTACTAC

Primer_r
: ACAATGAGCGGGATGGTGCGG

PCR conditions
: 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

RT-PCR-ELISA	Description

RH mapping information	Description

Chromosome No.

: 14

Experimental conditions

Panel name	: GeneBridge 4
Primer_f	: CCAGGCACTTCCGTAATGTTC
Primer_r	: ATCACAGAGTCATGCAGGGGC
PCR product length	: 117 bp
PCR conditions	: 95 °C15 sec66 °C60 sec30 cycles

How to obtain KIAA clone(s) Back to the HUGE Protein Database homepage

	cloned DNA seq.
Warning for N-terminal truncation:	NO
Warning for coding interruption:	NO

Length of 3'UTR	3802 bp
Genome contig ID	gi51511730f_68696644
PolyA signal sequence (AATAAA,-23)	+--------+--------+----*----+---- ACACACACCTGGAATAAAACCACTTCTTACATGTC
Flanking genome sequence (194294 - 194343)	----+--------+--------+--------+--------+----* CACATGCACCAGCGCCTTCCTTTCTGCCTCCAGGCCTAGCCCTTCAGCAC

	Chr	f/r	start	end	exon	identity	class
ContigView(URL based/DAS)	14	f	68796644	68890936	15	100.0	Perfect prediction

Primer_f	: ATCCTGGGCACTTTCTACTAC
Primer_r	: ACAATGAGCGGGATGGTGCGG
PCR conditions	: 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

Gene/Protein Characteristic Table for KIAA1130

Features of the cloned DNA sequence

Features of the protein sequence

Expression profile

RH mapping information