# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/hh00715.fasta.huge -Q ../query/KIAA1130.ptfa ./tmplib.24314 2
FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 KIAA1130, 575 aa
 vs ./tmplib.24314 library

1986930 residues in  2037 sequences
  Expectation_n fit: rho(ln(x))= 4.9562+/-0.00492; mu= 15.3799+/- 0.335
 mean_var=87.4516+/-20.496, 0's: 0 Z-trim: 2  B-trim: 4 in 1/39
 Lambda= 0.137148

FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 37, opt: 25, open/ext: -10/-2, width:  16
The best scores are:                                      opt bits E(2037)
KIAA1918  ( 516 res)   hj01313                     ( 516) 1253 257.8 1.5e-69


>>KIAA1918  ( 516 res)   hj01313                          (516 aa)
 initn: 1183 init1: 600 opt: 1253  Z-score: 1340.3  bits: 257.8 E(): 1.5e-69
Smith-Waterman score: 1253;  44.570% identity (71.041% similar) in 442 aa overlap (119-547:38-464)

       90       100       110       120       130       140        
KIAA11 IPLIVTGTPSKGFDEKAYLSAKQLKAGEDPYRQHAFNQLESDKLSPDRPIRDTRHYSCPS
                                     .. . :: . :: .. .: . :.:  .: .
KIAA19 AVISRNQEGPGEMGKAVLIPKDDQEKMKELFKINQFNLMASDLIALNRSLPDVRLEGCKT
        10        20        30        40        50        60       

      150       160       170       180       190       200        
KIAA11 VSYSSDLPATSVIITFHNEARSTLLRTVKSVLNRTPANLIQEIILVDDFSSDPEDCLLLT
         : ..:: :::.:.::::: ::::::: ::.::.:  :..:.::::: :   .: : ::
KIAA19 KVYPDELPNTSVVIVFHNEAWSTLLRTVYSVINRSPHYLLSEVILVDDASE--RDFLKLT
        70        80        90       100       110         120     

              210       220       230       240       250       260
KIAA11 --------RIPKVKCLRNDRREGLIRSRVRGADVAAATVLTFLDSHCEVNTEWLPPMLQR
               ..: :: .: ..: ::::.:.::: .. . :.::::.::: .  :: :.: :
KIAA19 LENYVKNLEVP-VKIIRMEERSGLIRARLRGAAASKGQVITFLDAHCECTLGWLEPLLAR
         130        140       150       160       170       180    

              270       280       290       300       310          
KIAA11 VKEDHTRVVSPIIDVISLDNFAYLAASADLRGGFDWSLHFKWEQIPLEQKMTRT--DPTR
       .:::.  :: ::::::: :.: :.:.:    :::.:.:.:.:  .: ...: :   : : 
KIAA19 IKEDRKTVVCPIIDVISDDTFEYMAGSDMTYGGFNWKLNFRWYPVP-QREMDRRKGDRTL
          190       200       210       220       230        240   

      320       330       340       350       360       370        
KIAA11 PIRTPVIAGGIFVIDKSWFNHLGKYDAQMDIWGGENFELSFRVWMCGGSLEIVPCSRVGH
       :.:::..:::.: ::...:...: ::: ::::::::.:.:::.:.:::::::: ::.:::
KIAA19 PVRTPTMAGGLFSIDRNYFEEIGTYDAGMDIWGGENLEMSFRIWQCGGSLEIVTCSHVGH
           250       260       270       280       290       300   

      380       390       400       410       420       430        
KIAA11 VFRKRHPYNFPEGNALTYIRNTKRTAEVWMDEYKQYYYEARPSAIGKAFGSVATRIEQRK
       ::::  ::.:: :.. .  .:..: :::::::.:...:   :...   .:.:..:   :.
KIAA19 VFRKATPYTFPGGTGHVINKNNRRLAEVWMDEFKDFFYIISPGVVKVDYGDVSVRKTLRE
           310       320       330       340       350       360   

      440       450       460         470       480       490      
KIAA11 KMNCKSFRWYLENVYPELTVPVKEALPGIIK--QGVNCLESQGQNTAGDFLLGMGICRGS
       ...:: : :::::.::.  .: .    : :.  .  .::...:..   .  .:.  :.: 
KIAA19 NLKCKPFSWYLENIYPDSQIPRRYYSLGEIRNVETNQCLDNMGRKE--NEKVGIFNCHGM
           370       380       390       400         410       420 

        500        510       520       530       540       550     
KIAA11 AKNPQPAQAWLFS-DHLIQQQGKCLAATSTLMSSPGSPVILQMCNPREGKQVSLLASGPE
       . :    :.. .. :. :. .  ::      .:  ..:::.  :.  .:.:.        
KIAA19 GGN----QVFSYTADKEIRTDDLCLD-----VSRLNGPVIMLKCHHMRGNQLWEYDAERL
                 430       440            450       460       470  

         560       570                             
KIAA11 AQQPEGPCLRVADLGRRAPD                        
                                                   
KIAA19 TLRHVNSNQCLDEPSEEDKMVPTMQDCSGSRSQQWLLRNMTLGT
            480       490       500       510      




575 residues in 1 query   sequences
1986930 residues in 2037 library sequences
 Scomplib [34.26]
 start: Thu Dec 18 15:10:24 2008 done: Thu Dec 18 15:10:25 2008
 Total Scan time:  0.480 Total Display time:  0.010

Function used was FASTA [version 34.26.5 April 26, 2007]