hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-18184209/chunk_1/iprscan-20080501-18184209.nocrc
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Query sequence: KIAA1133
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00097.15.fs Zinc finger, C3HC4 type (RING finger)           34.4    1.1e-11   1
PF00097.15.ls Zinc finger, C3HC4 type (RING finger)           36.3      1e-07   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00097.15.fs   1/1     248   288 ..     1    50 []    34.4  1.1e-11
PF00097.15.ls   1/1     248   288 ..     1    50 []    36.3    1e-07

Alignments of top-scoring domains:
PF00097.15.fs: domain 1 of 1, from 248 to 288: score 34.4, E = 1.1e-11
                   *->CrICleelkepsndfplilpCgHsGslkyfCrsClerwlsssgnttC
                      C+ICle +++ +  ++ ++pC H+     f+r+C+  wl      tC
    KIAA1133   248    CAICLEKYIDGE--ELRVIPCTHR-----FHRKCVDPWLL--QHHTC 285  

                   plC<-*
                   p C   
    KIAA1133   286 PHC    288  

PF00097.15.ls: domain 1 of 1, from 248 to 288: score 36.3, E = 1e-07
                   *->CrICleelkepsndfplilpCgHsGslkyfCrsClerwlsssgnttC
                      C+ICle +++ +  ++ ++pC H+     f+r+C+  wl      tC
    KIAA1133   248    CAICLEKYIDGE--ELRVIPCTHR-----FHRKCVDPWLL--QHHTC 285  

                   plC<-*
                   p C   
    KIAA1133   286 PHC    288  

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