# /hgtech/tools/fasta-34.26.5_v890/fasta34_t -T 8 -b50 -d10 -E0.01 -H -O./tmp/hj00512.fasta.nr -Q ../query/KIAA1143.ptfa /cdna2/lib/nr/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 KIAA1143, 116 aa vs /cdna2/lib/nr/nr library 2693465022 residues in 7827732 sequences statistics sampled from 60000 to 7827217 sequences Expectation_n fit: rho(ln(x))= 5.3157+/-0.000183; mu= 4.4486+/- 0.010 mean_var=77.6240+/-14.991, 0's: 45 Z-trim: 48 B-trim: 0 in 0/64 Lambda= 0.145571 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 36, opt: 24, open/ext: -10/-2, width: 16 The best scores are: opt bits E(7827732) gi|119586338|gb|EAW65934.1| hCG1639915 [Homo sapie ( 149) 750 165.9 1.5e-39 gi|109041168|ref|XP_001105000.1| PREDICTED: simila ( 176) 737 163.2 1.2e-38 gi|12835450|dbj|BAB23258.1| unnamed protein produc ( 155) 643 143.4 9.3e-33 gi|57101292|ref|XP_533861.1| PREDICTED: similar to ( 172) 639 142.6 1.8e-32 gi|62858523|ref|NP_001016005.1| hypothetical prote ( 154) 429 98.5 3.1e-19 gi|12848663|dbj|BAB28043.1| unnamed protein produc ( 116) 427 98.0 3.4e-19 gi|114158713|ref|NP_997863.2| hypothetical protein ( 151) 383 88.8 2.5e-16 gi|47213768|emb|CAF95597.1| unnamed protein produc ( 156) 367 85.5 2.6e-15 gi|149632043|ref|XP_001513155.1| PREDICTED: hypoth ( 113) 293 69.8 9.8e-11 gi|210130071|gb|EEA77743.1| hypothetical protein B ( 151) 289 69.1 2.2e-10 gi|194163931|gb|EDW78832.1| GK12659 [Drosophila wi ( 168) 197 49.8 0.00016 gi|194180301|gb|EDW93912.1| GE20329 [Drosophila ya ( 153) 195 49.4 0.00019 gi|194108132|gb|EDW30175.1| GL22461 [Drosophila pe ( 156) 190 48.3 0.00041 gi|44890528|gb|AAH66704.1| Zgc:77056 protein [Dani ( 85) 186 47.3 0.00046 gi|194195389|gb|EDX08965.1| GD13697 [Drosophila si ( 151) 186 47.5 0.00071 gi|194128174|gb|EDW50217.1| GM14501 [Drosophila se ( 151) 182 46.6 0.0013 gi|220902431|gb|ACL83232.1| CG42245 [Drosophila me ( 151) 182 46.6 0.0013 gi|190653080|gb|EDV50323.1| GG14877 [Drosophila er ( 151) 176 45.4 0.003 gi|108867954|gb|EAT32414.1| conserved hypothetical ( 140) 174 44.9 0.0038 gi|108879499|gb|EAT43724.1| conserved hypothetical ( 140) 173 44.7 0.0044 >>gi|119586338|gb|EAW65934.1| hCG1639915 [Homo sapiens] (149 aa) initn: 750 init1: 750 opt: 750 Z-score: 866.0 bits: 165.9 E(): 1.5e-39 Smith-Waterman score: 750; 98.276% identity (99.138% similar) in 116 aa overlap (1-116:34-149) 10 20 30 KIAA11 QPQPPDEDGDHSDKEDEQPQVVVLKKGDLS :::::::::::::::::::::::::::::: gi|119 YVRPAEPAFLARFKERVGYREGPTVETKRIQPQPPDEDGDHSDKEDEQPQVVVLKKGDLS 10 20 30 40 50 60 40 50 60 70 80 90 KIAA11 VEEVMKIKAEIKAAKADEEPTPADGRIIYRKPVKHPSDEKYSGLTASSKKKKPNEDEVNQ :::: :::::::::::::::::::::.::::::::::::::::::::::::::::::::: gi|119 VEEVTKIKAEIKAAKADEEPTPADGRVIYRKPVKHPSDEKYSGLTASSKKKKPNEDEVNQ 70 80 90 100 110 120 100 110 KIAA11 DSVKKNSQKQIKNSSLLSFDNEDENE :::::::::::::::::::::::::: gi|119 DSVKKNSQKQIKNSSLLSFDNEDENE 130 140 >>gi|109041168|ref|XP_001105000.1| PREDICTED: similar to (176 aa) initn: 737 init1: 737 opt: 737 Z-score: 850.3 bits: 163.2 E(): 1.2e-38 Smith-Waterman score: 737; 96.552% identity (100.000% similar) in 116 aa overlap (1-116:39-154) 10 20 30 KIAA11 QPQPPDEDGDHSDKEDEQPQVVVLKKGDLS :::::::::::::::::::::::::::::: gi|109 YVRPAEPAFLARFKERVGYREGPTIETKRIQPQPPDEDGDHSDKEDEQPQVVVLKKGDLS 10 20 30 40 50 60 40 50 60 70 80 90 KIAA11 VEEVMKIKAEIKAAKADEEPTPADGRIIYRKPVKHPSDEKYSGLTASSKKKKPNEDEVNQ ::::::::::::::::::::.:::::::::::::.::::::::::::::::::::::.:: gi|109 VEEVMKIKAEIKAAKADEEPAPADGRIIYRKPVKRPSDEKYSGLTASSKKKKPNEDEINQ 70 80 90 100 110 120 100 110 KIAA11 DSVKKNSQKQIKNSSLLSFDNEDENE :::::.:::::::::::::::::::: gi|109 DSVKKSSQKQIKNSSLLSFDNEDENESCYVAEVGLKCLGSLDPPSSAS 130 140 150 160 170 >>gi|12835450|dbj|BAB23258.1| unnamed protein product [M (155 aa) initn: 533 init1: 511 opt: 643 Z-score: 744.3 bits: 143.4 E(): 9.3e-33 Smith-Waterman score: 643; 86.325% identity (94.872% similar) in 117 aa overlap (1-116:39-155) 10 20 30 KIAA11 QPQPPDEDGDHSDKEDEQPQVVVLKKGDLS ::: :::::.:::::::::::::::::::. gi|128 YVRPAEPAFLSRFKERVGYKEGATVETKKIQPQLPDEDGNHSDKEDEQPQVVVLKKGDLT 10 20 30 40 50 60 40 50 60 70 80 KIAA11 VEEVMKIKAEIKAAKADEEPTPADGRIIYRKPVKHPSDEKYSGLTASSKKKKPNEDEVN- .::::::::::::::.:::: ::::::.::::::. :::: ::::::::::: :::.:: gi|128 AEEVMKIKAEIKAAKTDEEPPPADGRIVYRKPVKRSSDEKCSGLTASSKKKKTNEDDVNK 70 80 90 100 110 120 90 100 110 KIAA11 QDSVKKNSQKQIKNSSLLSFDNEDENE :.::.::::::::::::::::.::::: gi|128 QSSVRKNSQKQIKNSSLLSFDSEDENE 130 140 150 >>gi|57101292|ref|XP_533861.1| PREDICTED: similar to T25 (172 aa) initn: 638 init1: 490 opt: 639 Z-score: 739.2 bits: 142.6 E(): 1.8e-32 Smith-Waterman score: 639; 88.696% identity (94.783% similar) in 115 aa overlap (1-114:56-170) 10 20 30 KIAA11 QPQPPDEDGDHSDKEDEQPQVVVLKKGDLS : : :::::::::::::::::::::::::: gi|571 YVRPAEPAFLARFKERVGYREGPTVETKRTQLQLPDEDGDHSDKEDEQPQVVVLKKGDLS 30 40 50 60 70 80 40 50 60 70 80 KIAA11 VEEVMKIKAEIKAAKADEEPTPADGRIIYRKPVKHPSDEKYSGLTASSKKKKPNEDEVN- ::::::::::::::::::::. .::::.::::::. ::::::::::::::.: .:::.: gi|571 VEEVMKIKAEIKAAKADEEPAAVDGRIMYRKPVKRSSDEKYSGLTASSKKRKAKEDEINN 90 100 110 120 130 140 90 100 110 KIAA11 QDSVKKNSQKQIKNSSLLSFDNEDENE ::::::::::::::::::::::::: gi|571 QDSVKKNSQKQIKNSSLLSFDNEDEIA 150 160 170 >>gi|62858523|ref|NP_001016005.1| hypothetical protein L (154 aa) initn: 484 init1: 332 opt: 429 Z-score: 501.5 bits: 98.5 E(): 3.1e-19 Smith-Waterman score: 429; 60.000% identity (84.545% similar) in 110 aa overlap (7-116:45-153) 10 20 30 KIAA11 QPQPPDEDGDHSDKEDEQPQVVVLKKGDLSVEEVMK .:.: :::::::::::::.:::::.::::: gi|628 PSFISKFKKDVGYKEGPTVDTKRQELPVLADDSDGSDKEDEQPQVVVLRKGDLSAEEVMK 20 30 40 50 60 70 40 50 60 70 80 90 KIAA11 IKAEIKAAKADEEPTPADGRIIYRKPVKHPSDEKYSGLTASSKKKKPNEDEVNQDSVKKN :: .:: . :: .:.::.:...::::. : .: ::..::: ::: .:: ... : . gi|628 IKEQIKENSKGEEAAPSDGKILFKKPVKRLSGDKISGINASSTKKKKQED-IKETSSTNA 80 90 100 110 120 130 100 110 KIAA11 SQKQIKNSSLLSFDNEDENE ::::..::::::::..:.:. gi|628 SQKQVRNSSLLSFDDDDDNDD 140 150 >>gi|12848663|dbj|BAB28043.1| unnamed protein product [M (116 aa) initn: 449 init1: 427 opt: 427 Z-score: 500.9 bits: 98.0 E(): 3.4e-19 Smith-Waterman score: 427; 83.117% identity (93.506% similar) in 77 aa overlap (1-77:39-115) 10 20 30 KIAA11 QPQPPDEDGDHSDKEDEQPQVVVLKKGDLS ::: :::::.:::::::::::::::::::. gi|128 YVRPAEPAFLSRFKERVGYKEGPTVETKKIQPQLPDEDGNHSDKEDEQPQVVVLKKGDLT 10 20 30 40 50 60 40 50 60 70 80 90 KIAA11 VEEVMKIKAEIKAAKADEEPTPADGRIIYRKPVKHPSDEKYSGLTASSKKKKPNEDEVNQ .::::::::::::::.:::: ::::::.::::::. :::: ::: .. gi|128 AEEVMKIKAEIKAAKTDEEPPPADGRIVYRKPVKRSSDEKCSGLQGTP 70 80 90 100 110 100 110 KIAA11 DSVKKNSQKQIKNSSLLSFDNEDENE >>gi|114158713|ref|NP_997863.2| hypothetical protein LOC (151 aa) initn: 337 init1: 195 opt: 383 Z-score: 449.4 bits: 88.8 E(): 2.5e-16 Smith-Waterman score: 383; 54.783% identity (81.739% similar) in 115 aa overlap (2-116:41-149) 10 20 30 KIAA11 QPQPPDEDGDHSDKEDEQPQVVVLKKGDLSV :: :..:: ::.:::.::::::::::::. gi|114 KPAEPSFLKKFKNDVGFKEGPTVETKKEQMPQCDDDSGD-SDREDEMPQVVVLKKGDLSA 20 30 40 50 60 40 50 60 70 80 90 KIAA11 EEVMKIKAEIKAAKADEEPTPADGRIIYRKPVKHPSDEKYSGLTASSKKKKPNEDEVNQD :::::.: . : ..::.: :.::.:...::::. :: :. :.::::.::: .:: ... gi|114 EEVMKMKKDSKEENTDEQP-PSDGKIVFKKPVKRSSD-KFEGITASSSKKKKSEDGEKKE 70 80 90 100 110 120 100 110 KIAA11 SVKKNSQKQIKNSSLLSFDNEDENE .. ..:::::::: ..:..: gi|114 ---PKAGVKVKNSSLLSFGGDDDDEED 130 140 150 >>gi|47213768|emb|CAF95597.1| unnamed protein product [T (156 aa) initn: 405 init1: 174 opt: 367 Z-score: 431.0 bits: 85.5 E(): 2.6e-15 Smith-Waterman score: 367; 51.261% identity (80.672% similar) in 119 aa overlap (1-116:40-156) 10 20 30 KIAA11 QPQPPDEDGDHSDKEDEQPQVVVLKKGDLS ::.: :: . ::.:::.:::::::.:::. gi|472 SWVKPTEPSFLKKFKDDVGYKEGPTVDTKRQPMPAPEDDSGSDREDESPQVVVLKSGDLT 10 20 30 40 50 60 40 50 60 70 80 KIAA11 VEEVMKIKAEIKAA---KADEEPTPADGRIIYRKPVKHPSDEKYSGLTASSKKKKPNEDE ..:: ::: : . : : .:: : ::.:...:: :. :.::..:.::::.::: .. : gi|472 ADEVKKIKEEERPATGPKKGDEPPP-DGKILFKKPEKRSSSEKFQGITASSSKKKKSDGE 70 80 90 100 110 120 90 100 110 KIAA11 VNQDSVKKNSQKQIKNSSLLSFDNEDENE .... :..: :.:::.::::: ...:.. gi|472 -KMEGEKETSGKKIKNNSLLSFGGDEEED 130 140 150 >>gi|149632043|ref|XP_001513155.1| PREDICTED: hypothetic (113 aa) initn: 366 init1: 221 opt: 293 Z-score: 349.0 bits: 69.8 E(): 9.8e-11 Smith-Waterman score: 293; 61.728% identity (80.247% similar) in 81 aa overlap (36-114:32-112) 10 20 30 40 50 60 KIAA11 DEDGDHSDKEDEQPQVVVLKKGDLSVEEVMKIKAEIKAAKADEEPTPADGRIIYRKPVKH ..: . . ::::.::::.:..:::::. gi|149 GALHHFIGIVVSTSVVRPPSPTRKAPSPQQQLKESNNNSDDDEEPVPADGKIMFRKPVKR 10 20 30 40 50 60 70 80 90 100 110 KIAA11 PSDEKYSGLTASSKKKKPNEDEVNQDSVK-KNSQKQIKNSSLLSF-DNEDENE ::::: ::::::.::: .: . ::: ::.:::::::::::: :.:.: gi|149 SSDEKYMGLTASSSKKKKEEKKNMGDSVAPKNTQKQIKNSSLLSFGDDEEEY 70 80 90 100 110 >>gi|210130071|gb|EEA77743.1| hypothetical protein BRAFL (151 aa) initn: 276 init1: 117 opt: 289 Z-score: 342.7 bits: 69.1 E(): 2.2e-10 Smith-Waterman score: 289; 46.087% identity (77.391% similar) in 115 aa overlap (3-116:43-149) 10 20 30 KIAA11 QPQPPDEDGD-HSDKEDEQPQVVVLKKGDLSV .::::. : ..:..::.: :::: ::::. gi|210 KPSEPSFIKQFKERVGYKEGPDINTKKAAEKPPDEEEDARDDRDDEKPTVVVLGKGDLTQ 20 30 40 50 60 70 40 50 60 70 80 90 KIAA11 EEVMKIKAEIKAAKADEEPTPADGRIIYRKPVKHPSDEKYSGLTASSKKKKPNEDEVNQD ::. : . : . : :: . :.:.: ..::::. ...: : :.::..::: ..:. . gi|210 EEAEKWEEEKE--KKDEATAIAEGKITFKKPVKRSAEDK-SELNASTSKKK-KDDKPD-- 80 90 100 110 120 100 110 KIAA11 SVKKNSQKQIKNSSLLSFDNEDENE ::...:..:::::::: ...:.: gi|210 --KKSKMKKVKNSSLLSFGDDEEEEDG 130 140 150 116 residues in 1 query sequences 2693465022 residues in 7827732 library sequences Tcomplib [34.26] (8 proc) start: Tue Mar 3 21:56:00 2009 done: Tue Mar 3 22:03:13 2009 Total Scan time: 1038.280 Total Display time: 0.020 Function used was FASTA [version 34.26.5 April 26, 2007]