# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/hj05565.fasta.huge -Q ../query/KIAA1144.ptfa ./tmplib.24314 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 KIAA1144, 489 aa vs ./tmplib.24314 library 1987016 residues in 2037 sequences Expectation_n fit: rho(ln(x))= 3.7882+/-0.00448; mu= 18.4602+/- 0.306 mean_var=65.7899+/-14.854, 0's: 0 Z-trim: 6 B-trim: 5 in 1/39 Lambda= 0.158123 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 37, opt: 25, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2037) KIAA1044 ( 646 res) fh03989 ( 646) 541 132.7 7.2e-32 KIAA1356 ( 519 res) fj01605 ( 519) 146 42.5 8.4e-05 KIAA0176 ( 265 res) ha03941 ( 265) 137 40.0 0.00023 KIAA1123 ( 1717 res) fh01458 (1717) 133 40.2 0.0013 >>KIAA1044 ( 646 res) fh03989 (646 aa) initn: 654 init1: 225 opt: 541 Z-score: 664.0 bits: 132.7 E(): 7.2e-32 Smith-Waterman score: 731; 30.323% identity (64.731% similar) in 465 aa overlap (27-481:55-479) 10 20 30 40 50 KIAA11 RPRAARAAGASSMTGQSLWDVSEANVEDGEIRINVGGFKRRLRSHTLLRFPETRLG .:. : .::.: . . . :: :.:.: :: KIAA10 LPFARAAAIGWMPVASGPMPAPPRQERKRTQDALIVLNVSGTRFQTWQDTLERYPDTLLG 30 40 50 60 70 80 60 70 80 90 100 110 KIAA11 RLLLCHSREAILELCDDYDDVQREFYFDRNPELFPYVLHFYHTGKLHVMAELCVFSFSQE :.. .. : ....:::.:..: ..:.::.::::: . :. ....: KIAA10 -----SSERDFF-----YHPETQQYFFDRDPDIFRHILNFYRTGKLHYPRHECISAYDEE 90 100 110 120 130 120 130 140 150 160 170 KIAA11 IEYWGINEFFIDSCCSYSYHGRKVEPEQEKWDEQSDQESTTSSFDEILAFYNDASKFDGQ . ..:. .: .:: :. :. : . :. ....: ... : . KIAA10 LAFFGLIPEIIGDCCYEEYKDRRRE-NAERLQDDADTDTAGES---------------AL 140 150 160 170 180 190 200 210 220 230 KIAA11 PLGNFRRQLWLALDNPGYSVLSRVFSILSILVVMGSIITMCLNSLPDFQIPDSQGNPGED : . :...: :..:: :... :: .. . . :.:. ....: .: :. : KIAA10 PTMTARQRVWRAFENPHTSTMALVFYYVTGFFIAVSVIANVVETVP---CGSSPGHIKEL 180 190 200 210 220 230 240 250 260 270 280 KIAA11 P---RFEI----VEHFGIAWFTFELVARFAVAPDFLKFFKNALNLIDLMSIVPFYITLVV : :. . .. . :: : . :.:.::. .: ......::...:.:.:: ::. KIAA10 PCGERYAVAFFCLDTACVMIFTVEYLLRLAAAPSRYRFVRSVMSIIDVVAILPYYIGLVM 240 250 260 270 280 290 290 300 310 320 330 340 KIAA11 NLVVESTPTLANLGRVAQVLRLMRIFRILKLARHSTGLRSLGATLKYSYKEVGLLLLYLS . . . ....: :..:.:::.:..::: ::: :: ::: .:.:.::. :. KIAA10 TDNEDVSGAFVTL-------RVFRVFRIFKFSRHSQGLRILGYTLKSCASELGFLLFSLT 300 310 320 330 340 350 360 370 380 390 400 KIAA11 VGISIFSVVAYTIEKEENEG-LATIPACWWWATVSMTTVGYGDVVPGTTAGKLTASACIL ..: ::..: . :: . . ...::: .:.. :.:::.::::.:: : :::. .: : : KIAA10 MAIIIFATVMFYAEKGSSASKFTSIPAAFWYTIVTMTTLGYGDMVPKTIAGKIFGSICSL 350 360 370 380 390 400 410 420 430 440 450 460 KIAA11 AGILVVVLPITLIFNKFSHFYRRQKQLES--AMRSCDFGDGMKEVPSVNLRDYYAHKVKS .:.::..::. .: ..::..:..... .. :... .. .. . : . :. : .. KIAA10 SGVLVIALPVPVIVSNFSRIYHQNQRADKRRAQKKARLAR-IRAAKSGSANAYMQSKRNG 410 420 430 440 450 460 470 480 KIAA11 LMASLTNMSRSSPSELSLNDSLR : :.:. .:: .: KIAA10 L---LSNQLQSSEDEQAFVSKSGSSFETQHHHLLHCLEKTTNHEFVDEQVFEESCMEVAT 470 480 490 500 510 520 >>KIAA1356 ( 519 res) fj01605 (519 aa) initn: 180 init1: 68 opt: 146 Z-score: 178.0 bits: 42.5 E(): 8.4e-05 Smith-Waterman score: 148; 26.190% identity (54.286% similar) in 210 aa overlap (161-366:6-202) 140 150 160 170 180 190 KIAA11 CSYSYHGRKVEPEQEKWDEQSDQESTTSSFDEILAFYNDASKFDGQPLGNFRRQLWLALD .: .:: .: ::. . : . KIAA13 DIFMTEEQKKYYNAMKK-----LGSKKPQK--PIP 10 20 200 210 220 230 240 KIAA11 NPGYSVLSRVFSILSILVVMGSI-ITMCLNSLPDFQIPDSQGNPGEDPRFEIVEHFGIAW :. . . ::.... : :: : .::: . . :.::. .: : :. KIAA13 RPANKFQGMVFDFVTRQVFDISIMILICLNMVTMMVETDDQGKYMTLVLSRINLVF-IVL 30 40 50 60 70 80 250 260 270 280 290 300 KIAA11 FTFELVARFAVAPDFLKFFKNALNLIDLMSIVPFYITLVVNLVVESTPTLANLGRVAQVL :: :.: ... . .: . :..:.. .. . . . ..:. . .: : :. KIAA13 FTGEFVLKLVSLRHY--YFTIGWNIFDFVVVILSIVGMFLAEMIEKYFVSPTLFR---VI 90 100 110 120 130 140 310 320 330 340 350 360 KIAA11 RLMRIFRILKLARHSTGLRSLGATLKYSYK---EVGLLLLYLSVGISIFSVVAYTIEKEE :: :: :::.: . . :.:.: .: .: ..::::. . .::.. .. :.: KIAA13 RLARIGRILRLIKGAKGIRTLLFALMMSLPALFNIGLLLFLVMFIYAIFGMSNFAYVKKE 150 160 170 180 190 200 370 380 390 400 410 420 KIAA11 NEGLATIPACWWWATVSMTTVGYGDVVPGTTAGKLTASACILAGILVVVLPITLIFNKFS KIAA13 AGIDDMFNFETFGNSMICLFQITTSAGWDGLLAPILNSAPPDCDPDTIHPGSSVKGDCGN 210 220 230 240 250 260 >>KIAA0176 ( 265 res) ha03941 (265 aa) initn: 123 init1: 74 opt: 137 Z-score: 170.1 bits: 40.0 E(): 0.00023 Smith-Waterman score: 137; 32.609% identity (58.696% similar) in 92 aa overlap (31-122:76-162) 10 20 30 40 50 60 KIAA11 RPRAARAAGASSMTGQSLWDVSEANVEDGEIRINVGGFKRRLRSHTLLRFPETRLGRLLL .:.:::: .:: : :.. : :: KIAA01 HGRPAAAVAQRLEPGPGPPERAGGGGAARWVRLNVGGTYFVTTRQTLGREPKSFLCRL-- 50 60 70 80 90 100 70 80 90 100 110 120 KIAA11 CHSREAILELCDDYDDVQREFYFDRNPELFPYVLHFYHTGKLHVMAELCVFSFSQEIEYW : ... :: .: :.. . .::.: : .:.. . ::: . :: . .: :.. KIAA01 CCQEDP--ELDSDKDETG-AYLIDRDPTYFGPILNYLRHGKLIITKELAEEGVLEEAEFY 110 120 130 140 150 160 130 140 150 160 170 180 KIAA11 GINEFFIDSCCSYSYHGRKVEPEQEKWDEQSDQESTTSSFDEILAFYNDASKFDGQPLGN .: KIAA01 NIASLVRLVKERIRDNENRTSQGPVKHVYRVLQCQEEELTQMVSTMSDGWKFEQLISIGS 170 180 190 200 210 220 >>KIAA1123 ( 1717 res) fh01458 (1717 aa) initn: 157 init1: 90 opt: 133 Z-score: 156.4 bits: 40.2 E(): 0.0013 Smith-Waterman score: 160; 25.210% identity (53.361% similar) in 238 aa overlap (204-422:1048-1273) 180 190 200 210 220 230 KIAA11 DGQPLGNFRRQLWLALDNPGYSVLSRVFSILSILVVMG-SIITMCLNSLPDFQIPDSQGN : : :.: ...:: .. .: :. KIAA11 RRKAQCKPYYSDYSRFRLLVHHLCTSHYLDLFITGVIGLNVVTM---AMEHYQQPQIL-- 1020 1030 1040 1050 1060 1070 240 250 260 270 280 290 KIAA11 PGEDPRFEIVEHFGIAWFTFELVARFAVAPDFLKFFKNALNLIDLMSIVPFYITLVVNLV : ..: ... . :..: : .. :: : .::.. : .:: .:: . : .. KIAA11 ---DEALKICNYIFTVIFVLESVFKL-VAFGFRRFFQDRWNQLDL-AIVLLSIMGITLEE 1080 1090 1100 1110 1120 300 310 320 330 340 KIAA11 VESTPTLANLGRVAQVLRLMRIFRILKLARHSTGLRSLGATLKYSYKEVG--------LL .: . .: . ...:..:: :.::: . ..:.:.: :. . .:: :. KIAA11 IEVNASLPINPTIIRIMRVLRIARVLKLLKMAVGMRALLDTVMQALPQVGNLGLLFMLLF 1130 1140 1150 1160 1170 1180 350 360 370 380 390 400 KIAA11 LLYLSVGISIFSVVAYTIEKEENEGL---ATIPACWWWATVSMTTVGYGDVVPGTTAGKL ... ..:. .:. . : . ::: ::. . : ... :. :: : : KIAA11 FIFAALGVELFGDLECD-ETHPCEGLGRHATF-RNFGMAFLTLFRVSTGDNWNGIMKDTL 1190 1200 1210 1220 1230 1240 410 420 430 440 450 KIAA11 T----ASAC---ILAGILVVVLPITLIFNKFSHFYRRQKQLESAMRSCDFGDGMKEVPSV :.: ... : : . .: : KIAA11 RDCDQESTCYNTVISPIYFVSFVLTAQFVLVNVVIAVLMKHLEESNKEAKEEAELEAELE 1250 1260 1270 1280 1290 1300 489 residues in 1 query sequences 1987016 residues in 2037 library sequences Scomplib [34.26] start: Thu Dec 18 15:10:57 2008 done: Thu Dec 18 15:10:58 2008 Total Scan time: 0.440 Total Display time: 0.050 Function used was FASTA [version 34.26.5 April 26, 2007]