hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080501/iprscan-20080501-18364955/chunk_1/iprscan-20080501-18364955.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA1144 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF02214.13.fs K+ channel tetramerisation domain 174.7 3.9e-52 1 PF02214.13.ls K+ channel tetramerisation domain 176.7 5.2e-50 1 PF00520.21.ls Ion transport protein 148.7 1.4e-41 1 PF00520.21.fs Ion transport protein 147.0 4.8e-41 1 PF07885.6.fs Ion channel 55.9 7e-16 1 PF07885.6.ls Ion channel 57.9 3e-14 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF02214.13.fs 1/1 31 130 .. 1 102 [] 174.7 3.9e-52 PF02214.13.ls 1/1 31 130 .. 1 102 [] 176.7 5.2e-50 PF00520.21.ls 1/1 241 421 .. 1 224 [] 148.7 1.4e-41 PF00520.21.fs 1/1 241 421 .. 1 224 [] 147.0 4.8e-41 PF07885.6.fs 1/1 342 427 .. 1 81 [] 55.9 7e-16 PF07885.6.ls 1/1 342 427 .. 1 81 [] 57.9 3e-14 Alignments of top-scoring domains: PF02214.13.fs: domain 1 of 1, from 31 to 130: score 174.7, E = 3.9e-52 *->vrLNVGGkrFeTsksTLtrfkPdTlLgrllktdsheailrlcdfydd +r+NVGG++ +++++TL rf P+T+Lgrll ++s+eail+lcd+ydd KIAA1144 31 IRINVGGFKRRLRSHTLLRF-PETRLGRLLLCHSREAILELCDDYDD 76 dtnEyFFDRsPkhFetILnfYRtGdGkLhrp.evcldsfleEleFyglde E++FDR+P +F ++L+fY+t GkLh++ e+c++sf++E+e++g++e KIAA1144 77 VQREFYFDRNPELFPYVLHFYHT--GKLHVMaELCVFSFSQEIEYWGINE 124 laielC<-* +i++C KIAA1144 125 FFIDSC 130 PF02214.13.ls: domain 1 of 1, from 31 to 130: score 176.7, E = 5.2e-50 *->vrLNVGGkrFeTsksTLtrfkPdTlLgrllktdsheailrlcdfydd +r+NVGG++ +++++TL rf P+T+Lgrll ++s+eail+lcd+ydd KIAA1144 31 IRINVGGFKRRLRSHTLLRF-PETRLGRLLLCHSREAILELCDDYDD 76 dtnEyFFDRsPkhFetILnfYRtGdGkLhrp.evcldsfleEleFyglde E++FDR+P +F ++L+fY+t GkLh++ e+c++sf++E+e++g++e KIAA1144 77 VQREFYFDRNPELFPYVLHFYHT--GKLHVMaELCVFSFSQEIEYWGINE 124 laielC<-* +i++C KIAA1144 125 FFIDSC 130 PF00520.21.ls: domain 1 of 1, from 241 to 421: score 148.7, E = 1.4e-41 *->ildyvftviFtlEmllkiialgfklhsriafkYlrspwNilDflvvl i++ + +++Ft+E + ++ +++ + +k+++++ N++D+ +++ KIAA1144 241 IVEHFGIAWFTFELVARFAVAPDF------LKFFKNALNLIDLMSIV 281 pslislilsllgggsegdlyvreskdstlse.gspgllsvlrllRllRvL p++i+l++ l+ + s+++ +l++v+++lRl+R KIAA1144 282 PFYITLVVNLVVE----------------STpTLANLGRVAQVLRLMR-- 313 RllrlirrapglfRWelrtlWelnslg.rslksllnvllllllllfiFai ++r++++a+ ++t+ l+slg + s+ +v+llll l ++++i KIAA1144 314 -IFRILKLAR------HSTG--LRSLGaTLKYSYKEVGLLLLYLSVGISI 354 igvqlFggklnkccnpingntnFdsfgnaflwlFqtmTteGwgdvmpdtl ++v + ++ ++n +++ +++w++++mTt+G+gdv+p KIAA1144 355 FSVVAYTIEK-------EENEGLATIPACWWWATVSMTTVGYGDVVPG-- 395 agtvlgyiyfvsfiilgsflllNLfiavi<-* t+ g++ + s +il+++l++ L+i +i KIAA1144 396 --TTAGKLTA-SACILAGILVVVLPITLI 421 PF00520.21.fs: domain 1 of 1, from 241 to 421: score 147.0, E = 4.8e-41 *->ildyvftviFtlEmllkiialgfklhsriafkYlrspwNilDflvvl i++ + +++Ft+E + ++ +++ + +k+++++ N++D+ +++ KIAA1144 241 IVEHFGIAWFTFELVARFAVAPDF------LKFFKNALNLIDLMSIV 281 pslislilsllgggsegdlyvreskdstlse.gspgllsvlrllRllRvL p++i+l++ l+ + s+++ +l++v+++lRl+R KIAA1144 282 PFYITLVVNLVVE----------------STpTLANLGRVAQVLRLMR-- 313 RllrlirrapglfRWelrtlWelnslg.rslksllnvllllllllfiFai ++r++++a+ ++t+ l+slg + s+ +v+llll l ++++i KIAA1144 314 -IFRILKLAR------HSTG--LRSLGaTLKYSYKEVGLLLLYLSVGISI 354 igvqlFggklnkccnpingntnFdsfgnaflwlFqtmTteGwgdvmpdtl ++v + ++ ++n +++ +++w++++mTt+G+gdv+p KIAA1144 355 FSVVAYTIEK-------EENEGLATIPACWWWATVSMTTVGYGDVVPG-- 395 agtvlgyiyfvsfiilgsflllNLfiavi<-* t+ g++ + s +il+++l++ L+i +i KIAA1144 396 --TTAGKLTA-SACILAGILVVVLPITLI 421 PF07885.6.fs: domain 1 of 1, from 342 to 427: score 55.9, E = 7e-16 *->iilllvlifgtvyyal.......epeeg.wewsfldalYFsfvTlTT +lll+l g +++ + ++e eg + + ++++v++TT KIAA1144 342 GLLLLYLSVGISIFSVvaytiekEENEGlA--TIPACWWWATVSMTT 386 iGYGDivPlstdaGRlftivyiliGiplfalllavlgrflte<-* +GYGD+vP+ t aG+l + + il Gi +++l ++ ++ +++ KIAA1144 387 VGYGDVVPG-TTAGKLTASACILAGILVVVLPITLIFNKFSH 427 PF07885.6.ls: domain 1 of 1, from 342 to 427: score 57.9, E = 3e-14 *->iilllvlifgtvyyal.......epeeg.wewsfldalYFsfvTlTT +lll+l g +++ + ++e eg + + ++++v++TT KIAA1144 342 GLLLLYLSVGISIFSVvaytiekEENEGlA--TIPACWWWATVSMTT 386 iGYGDivPlstdaGRlftivyiliGiplfalllavlgrflte<-* +GYGD+vP+ t aG+l + + il Gi +++l ++ ++ +++ KIAA1144 387 VGYGDVVPG-TTAGKLTASACILAGILVVVLPITLIFNKFSH 427 //