hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-18364955/chunk_1/iprscan-20080501-18364955.nocrc
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Query sequence: KIAA1144
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00225                                                  42.4    6.2e-08   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00225    1/1      29   138 ..     1   114 []    42.4  6.2e-08

Alignments of top-scoring domains:
SM00225: domain 1 of 1, from 29 to 138: score 42.4, E = 6.2e-08
                   *->cDvtlvvggdlggdnaegkkfhasqHkavLaacrrdSpyFkalfes.
                        ++++vgg          k +      +L ++   +++ +++++  
    KIAA1144    29    GEIRINVGG---------FKRRL--RSHTLLRF---PETRLGRLLLc 61   

                   ..................ieldDeallievspeaFralLnflYt.kldlp
                   ++++   +  ++ ++ ++++ +D      ++pe F  +L+f++t+kl+++
    KIAA1144    62 hsreailelcddyddvqrEFYFD------RNPELFPYVLHFYHTgKLHVM 105  

                   eedvenveelLelAdfldSYGqip.lvelCeefllknl<-*
                    e  ++v ++ ++ +++   G+ +  ++ C+++ ++     
    KIAA1144   106 AE--LCVFSFSQEIEYW---GINEfFIDSCCSYSYHGR    138  

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