HUGE

Gene/Protein Characteristic Table for KIAA1147

Link to : Rouge \| GTOP \| SWISS-PROT/TrEMBL \| GeneCards\| RefDIC
Features : DNA sequence \| Protein sequence \| Expression \| Mapping

Product ID :	ORK00188
Accession No. :	AB032973
Description :
HUGO Gene Name :
Clone Name :	pf02131 [Vector Info]
Flexi ORF Clone :	pF1KA1147
Source :	Human brain (hippocampus)
Note :	We replaced hg00388, former representative clones for KIAA1147 with pf02131. (2005/08/06)

Features of the cloned DNA sequence	Description

Length: 7282 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis) for :
cloned DNA seq.
Warning for N-terminal truncation:
YES

Warning for coding interruption:
NO

Integrity of 3' end

Length of 3'UTR 5925 bp

Genome contig ID gi89161213r_140902999
PolyA signal sequence
(ATTAAA,-23)
+----*----+----*----+----*----+----
ATGATTTTTACAATTAAAGTTCACATTTTAACATG
Flanking genome sequence
(100000 - 99951)
----+----*----+----*----+----*----+----*----+----*
AACGTGCGTGCTGCAATCCCTTCTCCAGTCCGAGAAATGTGGTTTGTGGT

Ensembl ContigView (Add our DAS server as a DAS source)

Chr f/r start end exon identity class

ContigView(URL based/DAS) 7 r 141002999 141048411 9 99.1 Perfect prediction

Features of the protein sequence	Description

Length: 451 aa

Result of homology search against nr database (FASTA output, Multiple alignment)

Entry	Exp	ID%	Protein	Source
Q0PGW2	4.3e-177	96.5	Protein LCHN.	Rattus norvegicus
EDM15407	4.7e-177	96.5	similar to RIKE...	Rattus norvegicus
XP_001083728	8.8e-177	96.2	hypothetical pr...	Macaca mulatta
Q3UHG7	2.4e-176	96.2	Protein LCHN.	Mus musculus
EDL13586	2.7e-176	96.2	RIKEN cDNA E330...	Mus musculus

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of homology search against other HUGE database (FASTA output)
No significant homologues

Result of motif / domain search (InterProScan and SOSUI)

Motif_DB interpro_ID From To Entry Definition

None - - - - -

Motif_DB	interpro_ID	From	To	Entry	Definition
None	-	-	-	-	-

Prediction of transmembrane (TM) segments

Method No. N terminal transmembrane region C terminal type length

SOSUI2 1 261 PPVGVVCYRVYCCCCLANVSLPG 283 PRIMARY 23

Method	No.	N terminal	transmembrane region	C terminal	type	length
SOSUI2	1	261	PPVGVVCYRVYCCCCLANVSLPG	283	PRIMARY	23

Expression profile	Description

: RT-PCR-ELISA Description
: Experimental conditions

Primer_f
: GACAGGTCTAACATGGGCAAG

Primer_r
: TTCTCACCTCGGTCTAACTAC

PCR conditions
: 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

RT-PCR-ELISA	Description

RH mapping information	Description

Chromosome No.

: 7

Experimental conditions

Panel name	: unigene
Primer_f	: -
Primer_r	: -
PCR product length	: -
PCR conditions	: -

How to obtain KIAA clone(s) Back to the HUGE Protein Database homepage

	cloned DNA seq.
Warning for N-terminal truncation:	YES
Warning for coding interruption:	NO

Length of 3'UTR	5925 bp
Genome contig ID	gi89161213r_140902999
PolyA signal sequence (ATTAAA,-23)	+--------+--------+----*----+---- ATGATTTTTACAATTAAAGTTCACATTTTAACATG
Flanking genome sequence (100000 - 99951)	----+--------+--------+--------+--------+----* AACGTGCGTGCTGCAATCCCTTCTCCAGTCCGAGAAATGTGGTTTGTGGT

	Chr	f/r	start	end	exon	identity	class
ContigView(URL based/DAS)	7	r	141002999	141048411	9	99.1	Perfect prediction

Primer_f	: GACAGGTCTAACATGGGCAAG
Primer_r	: TTCTCACCTCGGTCTAACTAC
PCR conditions	: 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

Gene/Protein Characteristic Table for KIAA1147

Features of the cloned DNA sequence

Features of the protein sequence

Expression profile

RH mapping information