# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/bg00390.fasta.huge -Q ../query/KIAA1148.ptfa ./tmplib.24314 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 KIAA1148, 543 aa vs ./tmplib.24314 library 1986962 residues in 2037 sequences Expectation_n fit: rho(ln(x))= 10.7920+/-0.0105; mu= -10.5035+/- 0.714 mean_var=511.6277+/-124.364, 0's: 0 Z-trim: 2 B-trim: 0 in 0/40 Lambda= 0.056702 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 37, opt: 25, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2037) KIAA1636 ( 1864 res) ff02660 (1864) 3686 316.5 1.1e-86 >>KIAA1636 ( 1864 res) ff02660 (1864 aa) initn: 3686 init1: 3686 opt: 3686 Z-score: 1648.3 bits: 316.5 E(): 1.1e-86 Smith-Waterman score: 3686; 100.000% identity (100.000% similar) in 543 aa overlap (1-543:1322-1864) 10 20 30 KIAA11 PHRDSAYISSSPLGSHQVFDFRSSSSVGSP :::::::::::::::::::::::::::::: KIAA16 QDVENVSIGLQTEARPSQGLPVIQSPPSSPPHRDSAYISSSPLGSHQVFDFRSSSSVGSP 1300 1310 1320 1330 1340 1350 40 50 60 70 80 90 KIAA11 TRQTYQSTSPALSPTHQNSHYRPSPPHTSPAHQGGSYRFSPPPVGGQGKEYPSPPPSPLR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: KIAA16 TRQTYQSTSPALSPTHQNSHYRPSPPHTSPAHQGGSYRFSPPPVGGQGKEYPSPPPSPLR 1360 1370 1380 1390 1400 1410 100 110 120 130 140 150 KIAA11 RGPQYRASPPAESMSVYRSQSGSPVRYQQETSVSQLPGRPKSPLSKMAQRPYQMPQLPVA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: KIAA16 RGPQYRASPPAESMSVYRSQSGSPVRYQQETSVSQLPGRPKSPLSKMAQRPYQMPQLPVA 1420 1430 1440 1450 1460 1470 160 170 180 190 200 210 KIAA11 VPQQGLRLQPAKAQIVRSNQPSPAVHSSTVIPTGAYGQVAHSMASKYQSSQGDIGVSQSR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: KIAA16 VPQQGLRLQPAKAQIVRSNQPSPAVHSSTVIPTGAYGQVAHSMASKYQSSQGDIGVSQSR 1480 1490 1500 1510 1520 1530 220 230 240 250 260 270 KIAA11 LVYQGSIGGIVGDGRPVQHVQASLSAGAICQHGGLTKEDLPQRPSSAYRGGVRYSQTPQI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: KIAA16 LVYQGSIGGIVGDGRPVQHVQASLSAGAICQHGGLTKEDLPQRPSSAYRGGVRYSQTPQI 1540 1550 1560 1570 1580 1590 280 290 300 310 320 330 KIAA11 GRSQSASYYPVCHSKLDLERSSSQLGSPDVSHLIRRPISVNPNEIKPHPPTPRPLLHSQS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: KIAA16 GRSQSASYYPVCHSKLDLERSSSQLGSPDVSHLIRRPISVNPNEIKPHPPTPRPLLHSQS 1600 1610 1620 1630 1640 1650 340 350 360 370 380 390 KIAA11 VGLRFSPSSNSISSTSNLTPTFRPSSSIQQMEIPLKPAYERSCDELSPVSPTQGGYPSEP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: KIAA16 VGLRFSPSSNSISSTSNLTPTFRPSSSIQQMEIPLKPAYERSCDELSPVSPTQGGYPSEP 1660 1670 1680 1690 1700 1710 400 410 420 430 440 450 KIAA11 TRSRTTPFMGIIDKTARTQQYPHLHQQNRTWAVSSVDTVLSPTSPGNLPQPESFSPPSSI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: KIAA16 TRSRTTPFMGIIDKTARTQQYPHLHQQNRTWAVSSVDTVLSPTSPGNLPQPESFSPPSSI 1720 1730 1740 1750 1760 1770 460 470 480 490 500 510 KIAA11 SNIAFYNKTNNAQNGHLLEDDYYSPHGMLANGSRGDLLERVSQASSYPDVKVARTLPVAQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: KIAA16 SNIAFYNKTNNAQNGHLLEDDYYSPHGMLANGSRGDLLERVSQASSYPDVKVARTLPVAQ 1780 1790 1800 1810 1820 1830 520 530 540 KIAA11 AYQDNLYRQLSRDSRQGQTSPIKPKRPFVESNV ::::::::::::::::::::::::::::::::: KIAA16 AYQDNLYRQLSRDSRQGQTSPIKPKRPFVESNV 1840 1850 1860 543 residues in 1 query sequences 1986962 residues in 2037 library sequences Scomplib [34.26] start: Thu Dec 18 15:11:05 2008 done: Thu Dec 18 15:11:06 2008 Total Scan time: 0.470 Total Display time: 0.030 Function used was FASTA [version 34.26.5 April 26, 2007]