# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/hh03679s1.fasta.huge -Q ../query/KIAA1154.ptfa ./tmplib.24314 2
FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 KIAA1154, 476 aa
 vs ./tmplib.24314 library

1987029 residues in  2037 sequences
  Expectation_n fit: rho(ln(x))= 8.9357+/-0.00702; mu= -8.4549+/- 0.473
 mean_var=196.1186+/-46.465, 0's: 0 Z-trim: 2  B-trim: 16 in 2/38
 Lambda= 0.091583

FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 37, opt: 25, open/ext: -10/-2, width:  16
The best scores are:                                      opt bits E(2037)
KIAA0369  ( 794 res)   hh00177                     ( 794)  367 61.1 3.1e-10


>>KIAA0369  ( 794 res)   hh00177                          (794 aa)
 initn: 277 init1: 123 opt: 367  Z-score: 275.5  bits: 61.1 E(): 3.1e-10
Smith-Waterman score: 367;  30.595% identity (56.941% similar) in 353 aa overlap (12-342:117-454)

                                  10        20        30        40 
KIAA11                    MSGSSARSSHLSQPVVKSVLVYRNGDPFYAGRRVVIHEKKV
                                     :.  .:.:  ::::: .. :   .:   . 
KIAA03 SRGSRVNGLPSPTHSAHCSFYRTRTLQTLSSEKKAKKVRFYRNGDRYFKGIVYAISPDRF
         90       100       110       120       130       140      

              50            60        70        80        90       
KIAA11 SSFEVFLKEVT----GGVQAPFGAVRNIYTPRTGHRIRKLDQIQSGGNYVAGGQEAFKKL
        :::..: ..:     .:. : : ::.:::    ..: .:::.  : .:: :. : ::::
KIAA03 RSFEALLADLTRTLSDNVNLPQG-VRTIYTIDGLKKISSLDQLVEGESYVCGSIEPFKKL
        150       160        170       180       190       200     

       100       110       120                 130       140       
KIAA11 NYLDIGEIKKRPMEVVNTEVKPVIHSRINVS----------ARFRKPLQEPCTIFLIANG
       .:      .  :   ::  :: .  ::   :          .:  : . .:  . .: .:
KIAA03 EYTK----NVNPNWSVN--VKTTSASRAVSSLATAKGSPSEVRENKDFIRPKLVTIIRSG
             210         220       230       240       250         

       150       160       170       180       190       200       
KIAA11 DLINPASRLLIPRKTLNQWDHVLQMVTEKITLRSGAVHRLYTLEGKLVESGAELE-NGQF
            : :.:. .:: .....::  .:. : : ::.:.:::::.:: :    ..  . ..
KIAA03 VKPRKAVRILLNKKTAHSFEQVLTDITDAIKLDSGVVKRLYTLDGKQVMCLQDFFGDDDI
     260       270       280       290       300       310         

        210       220       230       240        250         260   
KIAA11 YVAVGRDKFKKLPYGELLFDKSTMRRPFGQKASSLPPIVGS-RKS--KGSGNDRHSKSTV
       ..: : .::.     ..:.:.:  :     :..:   :..: :.:  :. : .:.::: .
KIAA03 FIACGPEKFRY--QDDFLLDESECRV---VKSTSYTKIASSSRRSTTKSPGPSRRSKSPA
     320       330         340          350       360       370    

            270          280       290       300       310         
KIAA11 GSSD-NSSPQP---LKRKGKKEDVNSEKLTKLKQNVKLKNSQETIPNSDEGIFKAGAERS
       ..:. :..:       :.::. . .  .  .:.   : ..::.   ... .  :. .  .
KIAA03 STSSVNGTPGSQLSTPRSGKSPSPSPTSPGSLR---KQRSSQHGGSSTSLASTKVCSSMD
          380       390       400          410       420       430 

     320       330       340       350       360       370         
KIAA11 ETRGAAEVQEDEDTQVEVPVDQRPAEIVDEEEDGEKANKDAEQKEDFSGMNGDLEEEGGR
       :. : .:   .:  :. . . .:                                     
KIAA03 ENDGPGEEVSEEGFQIPATITERYKVGRTIGDGNFAVVKECVERSTAREYALKIIKKSKC
             440       450       460       470       480       490 




476 residues in 1 query   sequences
1987029 residues in 2037 library sequences
 Scomplib [34.26]
 start: Thu Dec 18 15:11:18 2008 done: Thu Dec 18 15:11:18 2008
 Total Scan time:  0.430 Total Display time:  0.020

Function used was FASTA [version 34.26.5 April 26, 2007]