hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-18533425/chunk_1/iprscan-20080501-18533425.nocrc
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Query sequence: KIAA1154
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00537                                                 291.3    7.3e-83   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00537    1/2      12   100 ..     1    96 []   148.3  8.2e-40
SM00537    2/2     134   221 ..     1    96 []   143.0  3.1e-38

Alignments of top-scoring domains:
SM00537: domain 1 of 2, from 12 to 100: score 148.3, E = 8.2e-40
                   *->slvkpkrirvyRNGDrffkGvrlvvnrkrqfkSFeaLLqdlTelklv
                      s++++k + vyRNGD+f++G+r+v+++k+ ++SFe++L+++T     
    KIAA1154    12    SQPVVKSVLVYRNGDPFYAGRRVVIHEKK-VSSFEVFLKEVTG---- 53   

                   vkldlpf.aVRklYTldGgkkvtsldeledgDgvYVasgteEkFkkvdYg
                    ++++pf+aVR++YT+++g+++++ld++++g g+YVa+g+e +Fkk++Y+
    KIAA1154    54 -GVQAPFgAVRNIYTPRTGHRIRKLDQIQSG-GNYVAGGQE-AFKKLNYL 100  

                   <-*
                      
    KIAA1154     -     -    

SM00537: domain 2 of 2, from 134 to 221: score 143.0, E = 3.1e-38
                   *->slvkpkrirvyRNGDrffkGvrlvvnrkrqfkSFeaLLqdlTelklv
                      +l++p++i+++ NGD +++++rl+++rk+  ++++++Lq++Te   +
    KIAA1154   134    PLQEPCTIFLIANGDLINPASRLLIPRKT-LNQWDHVLQMVTE---K 176  

                   vkldlpfaVRklYTldGgkkvtsldeledgDgvYVasgteEkFkkvdYg<
                   ++l+++ aV++lYTl+G k v+s +ele+g ++YVa+g++ kFkk++Yg 
    KIAA1154   177 ITLRSG-AVHRLYTLEG-KLVESGAELENG-QFYVAVGRD-KFKKLPYG  221  

                   -*
                     
    KIAA1154     -    -    

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