# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/hh05862.fasta.huge -Q ../query/KIAA1157.ptfa ./tmplib.24314 2
FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 KIAA1157, 428 aa
 vs ./tmplib.24314 library

1987077 residues in  2037 sequences
  Expectation_n fit: rho(ln(x))= 5.3118+/-0.00499; mu= 11.3738+/- 0.340
 mean_var=89.8933+/-21.186, 0's: 0 Z-trim: 3  B-trim: 0 in 0/40
 Lambda= 0.135273

FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 37, opt: 25, open/ext: -10/-2, width:  16
The best scores are:                                      opt bits E(2037)
KIAA1348  ( 545 res)   fj00937                     ( 545)  150 39.2 0.00076


>>KIAA1348  ( 545 res)   fj00937                          (545 aa)
 initn: 217 init1:  97 opt: 150  Z-score: 160.9  bits: 39.2 E(): 0.00076
Smith-Waterman score: 176;  25.307% identity (50.123% similar) in 407 aa overlap (3-374:83-451)

                                              10        20         
KIAA11                             GKSTHNED---QASCEVLTVKKKAGAVTSTPN
                                     ::...:   : : : ..   .:: .:    
KIAA13 LKWRLFSRVPPTLNSSPCGGFTLCKAYRHTSTEEDDFHLQLSPEQINEVLRAGETTHKIL
             60        70        80        90       100       110  

      30        40        50                 60        70          
KIAA11 RNSSKRRSSLPNGEGLQLKENSESE---GV-SCH-----YWSLFDGHAGSGAA-------
          :.  .:.   :. ::  ::  :   :: ::      ....::::.: . :       
KIAA13 DLESRVPNSVLRFESNQLAANSPVEDRRGVASCLQTNGLMFGIFDGHGGHACAQAVSERL
            120       130       140       150       160       170  

              80        90       100       110       120       130 
KIAA11 --VVASRLLQHHITEQLQDIVDILKNSAVLPPTCLGEEPENTPANSRTLTRAASLRGGVG
          ::  :..:.  :...  .. .:   .::     ..: ..  .. : ..   ::    
KIAA13 FYYVAVSLMSHQTLEHMEGAMESMK--PLLPILHWLKHPGDSIYKDVTSVHLDHLR----
            180       190         200       210       220          

             140       150       160       170          180        
KIAA11 APGSPSTPPTRFFTEKKIPHECLVIGALESAFKEMDLQIE---RERSSYNIS-----GGC
                  .  :  .  :  .. ...   ....:.:.   ... . :.:     .: 
KIAA13 ---VYWQELLDLHMEMGLSIEEALMYSFQRLDSDISLEIQAPLEDEVTRNLSLQVAFSGA
           230       240       250       260       270       280   

           190       200       210       220       230       240   
KIAA11 TALIVICLLGKLYVANAGDSRAIIIRNGEIIPMSSEFTPETERQRLQYLAFMQPHLLGNE
       :: ..     .:.:::::: :::.  . :   : : . : :. .     :. : .:   .
KIAA13 TACMAHVDGIHLHVANAGDCRAILGVQ-EDNGMWSCL-PLTRDHN----AWNQAELSRLK
           290       300       310         320           330       

           250          260       270       280       290       300
KIAA11 FTHLEFPRR---VQRKELGKKMLYRDFNMTGWAYKTIEDEDLKFPLIYGEGKKARVMATI
         : :   :   .. . ::  .  : :.          : .::.        . ... .:
KIAA13 REHPESEDRTIIMEDRLLGVLIPCRAFG----------DVQLKW--------SKELQRSI
       340       350       360                 370                 

              310          320       330       340       350       
KIAA11 GVTRGLGDHDLKVHD---SNIYIKPFLSSAPEVRIYDLSKYDHGSDDVLILATDGLWDVL
        . ::.. . :....    . :  :.:.. :::  . :   :.     :.::.:::::.:
KIAA13 -LERGFNTEALNIYQFTPPHYYTPPYLTAEPEVTYHRLRPQDK----FLVLASDGLWDML
      380       390       400       410       420           430    

       360       370       380       390       400       410       
KIAA11 SNEEVAEAITQFLPNCDPDDPHRYTLAAQDLVMRARGVLKDRGWRISNDRLGSGDDISVY
       :::.:.. ..  : . :                                           
KIAA13 SNEDVVRLVVGHLAEADWHKTDLAQRPANLGLMQSLLLQRKASGLHEADQNAATRLIRHA
          440       450       460       470       480       490    




428 residues in 1 query   sequences
1987077 residues in 2037 library sequences
 Scomplib [34.26]
 start: Thu Dec 18 15:11:23 2008 done: Thu Dec 18 15:11:24 2008
 Total Scan time:  0.410 Total Display time:  0.010

Function used was FASTA [version 34.26.5 April 26, 2007]