hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20080501/iprscan-20080501-18583044/chunk_1/iprscan-20080501-18583044.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA1157 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00332 128.4 7.6e-34 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00332 1/1 14 419 .. 1 338 [] 128.4 7.6e-34 Alignments of top-scoring domains: SM00332: domain 1 of 1, from 14 to 419: score 128.4, E = 7.6e-34 *->es.sgknlglrygl..gessmqgwrkpmEDahvirp..........f + ++ k++g + + +++ ss+ p+ + + ++++++ + ++ KIAA1157 14 VLtVKKKAGAVTSTpnRNSSKRRSSLPNGEGLQLKEnsesegvschY 60 fgVfDGHGGseaakflsknlheilaeelsfdkdeslkeneelk.d.ep.. +fDGH+Gs aa +s+ l +++ e+l+ d + +++ +p++ KIAA1157 61 WSLFDGHAGSGAAVVASRLLQHHITEQLQDIVDIL------KNsAvLPpt 104 ................................ess.e.r.ln.gdksled ++++++++ ++++ ++ + +++ + +++++ ++ + +++ ++++ + KIAA1157 105 clgeepentpansrtltraaslrggvgapgspSTPpTrFfTEkKIPHECL 154 veealrkaFlrtdeei............sTAvvalirgnklyvANvGDSR v al++aF+++d +i++++++ + ++++TA++++ +klyvAN+GDSR KIAA1157 155 VIGALESAFKEMDLQIererssynisggCTALIVICLLGKLYVANAGDSR 204 avLcrngkdswegvrtysavqLteDHkpsnedEreRIeaaGGeve..... a+++rng+ +++++ + +p e+Er+R++ + ++++ KIAA1157 205 AIIIRNGE----------IIPMSSEFTP--ETERQRLQYLAF--Mqphll 240 ......................................p.idrefvsngg +++ ++ + +++ ++++ +++ ++ + ++ ++ +++ + ++ g+ KIAA1157 241 gnefthlefprrvqrkelgkkmlyrdfnmtgwayktieDeDLKFPLIYGE 290 gvvwRvnGvvisLavsRalGDfelKk.ked.e.lieenrlyekfdprlpg g +Rv + + v+R lGD++lK ++++ + KIAA1157 291 GKKARVMAT---IGVTRGLGDHDLKVhDSNiYiK---------------- 321 kepyvsaePevtvvelsqtlvpted..ddfliLASDGlWDvlsnqeavdi p++s+ Pev + +ls +++++dd liLA+DGlWDvlsn+e+ + KIAA1157 322 --PFLSSAPEVRIYDLSK----YDHgsDDVLILATDGLWDVLSNEEVAEA 365 vrkhlrkgddkevksaaqelaradslrskkhndpkeaaklLvdlAl.... ++++l +++++ + + aa+ Lv+ A++ + KIAA1157 366 ITQFL------PNCDP------------DDPHRYTLAAQDLVMRARgvlk 397 .............kDNiTvvvv<-* +++ + ++++ ++ D+i+v v+ KIAA1157 398 drgwrisndrlgsGDDISVYVI 419 //