hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-19000795/chunk_1/iprscan-20080501-19000795.nocrc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query sequence: KIAA1158
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF07686.7.fs Immunoglobulin V-set domain                     84.4    2.9e-23   1
PF07686.7.ls Immunoglobulin V-set domain                     86.3    8.7e-23   1
PF00047.15.fs Immunoglobulin domain                           20.3    8.2e-05   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF07686.7.fs   1/1      37   158 ..     1   141 []    84.4  2.9e-23
PF07686.7.ls   1/1      37   158 ..     1   141 []    86.3  8.7e-23
PF00047.15.fs   1/1      92   137 ..    23    65 .]    20.3  8.2e-05

Alignments of top-scoring domains:
PF07686.7.fs: domain 1 of 1, from 37 to 158: score 84.4, E = 2.9e-23
                   *->qsqvtqepprWGLLLASLfWptsvtvaeGgsvtLpCtysGtfddsss
                      +++v+ e p+            +  +++G   +L+C        +++
    KIAA1158    37    CFPVCVEVPS------------ETEAVQGNPMKLRCISC---MKREE 68   

                   ssgtfsiyWyrqqppgkgpeliiisyysyystsegngtvgerfkgrvtls
                   +++t+ + W++ +p g+++ li+        +++g++ v+++f+gr +++
    KIAA1158    69 VEATTVVEWFY-RPEGGKDFLIY-------EYRNGHQEVESPFQGRLQWN 110  

                   gnpskgdfsLtIsnlqlsDsGtYyCavsns....nelvfgggtrLtVl<-
                   g+ +  d+s+t  n++l DsG Y+C vs + + + +  f + trL+ l  
    KIAA1158   111 GSKDLQDVSITVLNVTLNDSGLYTCNVSREfefeAHRPFVKTTRLIPL   158  

                   *
                    
    KIAA1158     -   -    

PF07686.7.ls: domain 1 of 1, from 37 to 158: score 86.3, E = 8.7e-23
                   *->qsqvtqepprWGLLLASLfWptsvtvaeGgsvtLpCtysGtfddsss
                      +++v+ e p+            +  +++G   +L+C        +++
    KIAA1158    37    CFPVCVEVPS------------ETEAVQGNPMKLRCISC---MKREE 68   

                   ssgtfsiyWyrqqppgkgpeliiisyysyystsegngtvgerfkgrvtls
                   +++t+ + W++ +p g+++ li+        +++g++ v+++f+gr +++
    KIAA1158    69 VEATTVVEWFY-RPEGGKDFLIY-------EYRNGHQEVESPFQGRLQWN 110  

                   gnpskgdfsLtIsnlqlsDsGtYyCavsns....nelvfgggtrLtVl<-
                   g+ +  d+s+t  n++l DsG Y+C vs + + + +  f + trL+ l  
    KIAA1158   111 GSKDLQDVSITVLNVTLNDSGLYTCNVSREfefeAHRPFVKTTRLIPL   158  

                   *
                    
    KIAA1158     -   -    

PF00047.15.fs: domain 1 of 1, from 92 to 137: score 20.3, E = 8.2e-05
                   *->lrngk.lt.gvlvtssenngdstyqt.sLtitnvtpeDggtYtCvv<
                      +rng++  ++  ++  + ng+++ q+ s t++nvt +D+g YtC v 
    KIAA1158    92    YRNGHqEVeSPFQGRLQWNGSKDLQDvSITVLNVTLNDSGLYTCNV  137  

                   -*
                     
    KIAA1158     -    -    

//