hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-19032533/chunk_1/iprscan-20080501-19032533.nocrc
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Query sequence: KIAA1160
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF06246.3.ls Isy1-like splicing family                      658.4   5.2e-195   1
PF06246.3.fs Isy1-like splicing family                      656.4   2.1e-194   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF06246.3.fs   1/1      21   288 ..     1   284 []   656.4 2.1e-194
PF06246.3.ls   1/1      21   288 ..     1   284 []   658.4 5.2e-195

Alignments of top-scoring domains:
PF06246.3.fs: domain 1 of 1, from 21 to 288: score 656.4, E = 2.1e-194
                   *->MARNaEKAmtmLaRwrkaKEeEekkpkeRRPylasECrnLpdAeKfR
                      MARNaEKAmt+LaR+r+a++eE+k+ keRRP+lasEC++Lp+AeK+R
    KIAA1160    21    MARNAEKAMTALARFRQAQLEEGKV-KERRPFLASECTELPKAEKWR 66   

                   reIireisKKvaeIQNaGLGEfriRDLNDEINKLlreKnhWEaRIvELGG
                   r+Ii+eisKKva+IQNaGLGEfriRDLNDEINKLlreK+hWE+RI+ELGG
    KIAA1160    67 RQIIGEISKKVAQIQNAGLGEFRIRDLNDEINKLLREKGHWEVRIKELGG 116  

                   pdYsKyspKmlDaeGrEvDvPnPsggsrGYKYFGAAKdLPGVRELFEKep
                   pdY+K++pKmlD+eG+Ev      +g+rGYKYFGAAKdLPGVRELFEKep
    KIAA1160   117 PDYGKVGPKMLDHEGKEV------PGNRGYKYFGAAKDLPGVRELFEKEP 160  

                   epekkRKtRadLmKnIDAeYYGYlDDEDGvLipLEkkiEkklikriveeW
                   +p ++RKtRa+LmK+ID+eYYGYlD++DGv++pLE+++Ekkl++++ve+W
    KIAA1160   161 LP-PPRKTRAELMKAIDFEYYGYLDEDDGVIVPLEQEYEKKLRAELVEKW 209  

                   kaeRleklareekkdadeeeevinIyaveeevLfeEeeeeaeeellgedg
                   kaeR+++lar+ek++++eeee+inIyav+e    eE++ee+ +e+ g d 
    KIAA1160   210 KAEREARLARGEKEEEEEEEEEINIYAVTE----EESDEEGSQEKGGDDS 255  

                   keekerkfiaHVPlPtQqeiEemlLeqKKmELLkKYa<-*
                   +    +kfiaHVP+P+QqeiEe+l+++KKmELL+KYa   
    KIAA1160   256 Q----QKFIAHVPVPSQQEIEEALVRRKKMELLQKYA    288  

PF06246.3.ls: domain 1 of 1, from 21 to 288: score 658.4, E = 5.2e-195
                   *->MARNaEKAmtmLaRwrkaKEeEekkpkeRRPylasECrnLpdAeKfR
                      MARNaEKAmt+LaR+r+a++eE+k+ keRRP+lasEC++Lp+AeK+R
    KIAA1160    21    MARNAEKAMTALARFRQAQLEEGKV-KERRPFLASECTELPKAEKWR 66   

                   reIireisKKvaeIQNaGLGEfriRDLNDEINKLlreKnhWEaRIvELGG
                   r+Ii+eisKKva+IQNaGLGEfriRDLNDEINKLlreK+hWE+RI+ELGG
    KIAA1160    67 RQIIGEISKKVAQIQNAGLGEFRIRDLNDEINKLLREKGHWEVRIKELGG 116  

                   pdYsKyspKmlDaeGrEvDvPnPsggsrGYKYFGAAKdLPGVRELFEKep
                   pdY+K++pKmlD+eG+Ev      +g+rGYKYFGAAKdLPGVRELFEKep
    KIAA1160   117 PDYGKVGPKMLDHEGKEV------PGNRGYKYFGAAKDLPGVRELFEKEP 160  

                   epekkRKtRadLmKnIDAeYYGYlDDEDGvLipLEkkiEkklikriveeW
                   +p ++RKtRa+LmK+ID+eYYGYlD++DGv++pLE+++Ekkl++++ve+W
    KIAA1160   161 LP-PPRKTRAELMKAIDFEYYGYLDEDDGVIVPLEQEYEKKLRAELVEKW 209  

                   kaeRleklareekkdadeeeevinIyaveeevLfeEeeeeaeeellgedg
                   kaeR+++lar+ek++++eeee+inIyav+e    eE++ee+ +e+ g d 
    KIAA1160   210 KAEREARLARGEKEEEEEEEEEINIYAVTE----EESDEEGSQEKGGDDS 255  

                   keekerkfiaHVPlPtQqeiEemlLeqKKmELLkKYa<-*
                   +    +kfiaHVP+P+QqeiEe+l+++KKmELL+KYa   
    KIAA1160   256 Q----QKFIAHVPVPSQQEIEEALVRRKKMELLQKYA    288  

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