hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-19081937/chunk_1/iprscan-20080501-19081937.nocrc
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Query sequence: KIAA1163
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00560.23.ls Leucine Rich Repeat                             58.4    2.2e-14   6
PF00560.23.fs Leucine Rich Repeat                             47.3    6.9e-12   6
PF00047.15.fs Immunoglobulin domain                           23.4    1.1e-05   1
PF00047.15.ls Immunoglobulin domain                           25.3     0.0002   1
PF07686.7.ls Immunoglobulin V-set domain                     12.0      0.003   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00560.23.ls   2/6      31    53 ..     1    24 []    10.1      3.3
PF00560.23.fs   3/6      55    77 ..     1    24 []    15.1   0.0046
PF00560.23.ls   3/6      55    77 ..     1    24 []    16.9    0.066
PF00560.23.ls   5/6     103   121 ..     1    24 []    10.6      2.7
PF00560.23.ls   6/6     130   152 ..     1    24 []    14.1     0.46
PF00560.23.fs   6/6     130   152 ..     1    24 []    12.3    0.026
PF07686.7.ls   1/1     214   303 ..     1   141 []    12.0    0.003
PF00047.15.fs   1/1     227   287 ..     1    65 []    23.4  1.1e-05
PF00047.15.ls   1/1     227   287 ..     1    65 []    25.3   0.0002

Alignments of top-scoring domains:
PF00560.23.ls: domain 2 of 6, from 31 to 53: score 10.1, E = 3.3
                   *->nLeeLdLsgCNpsltgslpss.l.nl<-*
                      +L +L Ls+ N +l+  ++s++++     
    KIAA1163    31    QLHSLLLSH-N-HLN-FISSEaFsPV    53   

PF00560.23.fs: domain 3 of 6, from 55 to 77: score 15.1, E = 0.0046
                   *->nLeeLdLsgCNpsltgslpss.l.nl<-*
                      nL++LdLs+ N +l ++l++  +++l   
    KIAA1163    55    NLRYLDLSS-N-QL-RTLDEFlFsDL    77   

PF00560.23.ls: domain 3 of 6, from 55 to 77: score 16.9, E = 0.066
                   *->nLeeLdLsgCNpsltgslpss.l.nl<-*
                      nL++LdLs+ N +l ++l++  +++l   
    KIAA1163    55    NLRYLDLSS-N-QL-RTLDEFlFsDL    77   

PF00560.23.ls: domain 5 of 6, from 103 to 121: score 10.6, E = 2.7
                   *->nLeeLdLsgCNpsltgslpsslnl<-*
                      +L++L+Ls  N +++  +p    l   
    KIAA1163   103    QLQKLYLSQ-N-QIS-RFPL--EL    121  

PF00560.23.ls: domain 6 of 6, from 130 to 152: score 14.1, E = 0.46
                   *->nLeeLdLsgCNpsltgslpss.l.nl<-*
                      +L+ LdLs+ N +l ++lp  +l++l   
    KIAA1163   130    KLTLLDLSS-N-KL-KNLPLPdLqKL    152  

PF00560.23.fs: domain 6 of 6, from 130 to 152: score 12.3, E = 0.026
                   *->nLeeLdLsgCNpsltgslpss.l.nl<-*
                      +L+ LdLs+ N +l ++lp  +l++l   
    KIAA1163   130    KLTLLDLSS-N-KL-KNLPLPdLqKL    152  

PF07686.7.ls: domain 1 of 1, from 214 to 303: score 12.0, E = 0.003
                   *->qsqvtqepprWGLLLASLfWptsvtvaeGgsvtLpCtysGtfddsss
                      + +  +   +            +  + +G++++++C  +        
    KIAA1163   214    CGEYKE--RA------------W-EAHLGDTLIIKCDTK-------- 237  

                   ssgtfsiyWyrqqppgkgpeliiisyysyystsegngtvgerfkgrvtls
                    +g+ +  W+   +  + + ++                     +g+v++s
    KIAA1163   238 QQGM-TKVWVT-PSNERVLDEVT--------------------NGTVSVS 265  

                   gnpskgdfsLtIsnlqlsDsGtYyCavsnsnelvfgggtrLtVl<-*
                    ++s     L  +++q++D G+Y+C  +++ + +    ++L V+   
    KIAA1163   266 KDGS-----LLFQQVQVEDGGVYTCYAMGE-TFNETLSVELKVH    303  

PF00047.15.fs: domain 1 of 1, from 227 to 287: score 23.4, E = 1.1e-05
                   *->GesvtLtCsvsgfgppdvtvtWlrngk.lt.gvlvtssenngdstyq
                      G+++ + C +      + t  W   + +   ++++  +++ ++  + 
    KIAA1163   227    GDTLIIKCDT---KQQGMTKVWVTPSNeRVlDEVTNGTVSVSKDGS- 269  

                   tsLtitnvtpeDggtYtCvv<-*
                     L +++v+ eDgg+YtC++   
    KIAA1163   270 --LLFQQVQVEDGGVYTCYA    287  

PF00047.15.ls: domain 1 of 1, from 227 to 287: score 25.3, E = 0.0002
                   *->GesvtLtCsvsgfgppdvtvtWlrngk.lt.gvlvtssenngdstyq
                      G+++ + C +      + t  W   + +   ++++  +++ ++  + 
    KIAA1163   227    GDTLIIKCDT---KQQGMTKVWVTPSNeRVlDEVTNGTVSVSKDGS- 269  

                   tsLtitnvtpeDggtYtCvv<-*
                     L +++v+ eDgg+YtC++   
    KIAA1163   270 --LLFQQVQVEDGGVYTCYA    287  

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