hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-19081937/chunk_1/iprscan-20080501-19081937.nocrc
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Query sequence: KIAA1163
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model     Description                                   Score    E-value  N 
--------  -----------                                   -----    ------- ---
SM00369                                                  97.0    2.1e-24   5
SM00409                                                  38.7    8.1e-07   1
SM00082                                                  29.2    0.00059   1

Parsed for domains:
Model     Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------  ------- ----- -----    ----- -----      -----  -------
SM00369     1/5      29    52 ..     1    24 []    23.6    0.028
SM00369     2/5      53    76 ..     1    24 []    27.8   0.0014
SM00369     3/5      77   100 ..     1    24 []    17.4        2
SM00369     4/5     101   124 ..     1    24 []    14.7      6.8
SM00369     5/5     128   151 ..     1    24 []    13.6      9.1
SM00082     1/1     165   215 ..     1    55 []    29.2  0.00059
SM00409     1/1     219   303 ..     1    58 []    38.7  8.1e-07

Alignments of top-scoring domains:
SM00369: domain 1 of 5, from 29 to 52: score 23.6, E = 0.028
                   *->LpnLreLdLsnNqLtsLPpgaFqg<-*
                      L++L +L Ls+N+L  + ++aF++   
    KIAA1163    29    LTQLHSLLLSHNHLNFISSEAFSP    52   

SM00369: domain 2 of 5, from 53 to 76: score 27.8, E = 0.0014
                   *->LpnLreLdLsnNqLtsLPpgaFqg<-*
                       pnLr LdLs+NqL++L + +F++   
    KIAA1163    53    VPNLRYLDLSSNQLRTLDEFLFSD    76   

SM00369: domain 3 of 5, from 77 to 100: score 17.4, E = 2
                   *->LpnLreLdLsnNqLtsLPpgaFqg<-*
                      L  L++L L nN++ ++ + aF++   
    KIAA1163    77    LQVLEVLLLYNNHIMAVDRCAFDD    100  

SM00369: domain 4 of 5, from 101 to 124: score 14.7, E = 6.8
                   *->LpnLreLdLsnNqLtsLPpgaFqg<-*
                      + +L++L+Ls Nq+++ P ++      
    KIAA1163   101    MAQLQKLYLSQNQISRFPLELVKE    124  

SM00369: domain 5 of 5, from 128 to 151: score 13.6, E = 9.1
                   *->LpnLreLdLsnNqLtsLP.pgaFqg<-*
                      Lp+L+ LdLs+N+L+ LP p++ q    
    KIAA1163   128    LPKLTLLDLSSNKLKNLPlPDL-QK    151  

SM00082: domain 1 of 1, from 165 to 215: score 29.2, E = 0.00059
                   *->NPfnCDCeLrwLlrwleaqnnealqdpvsslrCasPeslrGqpllll
                      NP+nCDCeL  L+ +++ ++ + ++d++ +l+C + ++l+   ++ l
    KIAA1163   165    NPLNCDCELYQLFSHWQYRQLSSVMDFQEDLYCMNSKKLH--NVFNL 209  

                   lpsefsCp<-*
                         C+   
    KIAA1163   210 S--FLNCG    215  

SM00409: domain 1 of 1, from 219 to 303: score 38.7, E = 8.1e-07
                   *->pp.vtvkeGesvtLtC.as....titWy...................
                       +  ++ +G+++ ++C+ +  + t  W ++++ +  +  ++++ + +
    KIAA1163   219    ERaWEAHLGDTLIIKCdTKqqgmTKVWVtpsnervldevtngtvsvs 265  

                   ....LtI.nvtpeDsesgGtYtCaat..sgsasseqgttLtVl<-*
                   ++++L +++v++eD    G+YtC a +   + +   +++L+V+   
    KIAA1163   266 kdgsLLFqQVQVEDG---GVYTCYAMgeTFNETL--SVELKVH    303  

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