hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-19095635/chunk_1/iprscan-20080501-19095635.nocrc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query sequence: KIAA1164
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF04424.4.ls Protein of unknown function (DUF544)           277.6    2.2e-80   1
PF04424.4.fs Protein of unknown function (DUF544)           275.8    7.8e-80   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF04424.4.fs   1/1      42   167 ..     1   150 []   275.8  7.8e-80
PF04424.4.ls   1/1      42   167 ..     1   150 []   277.6  2.2e-80

Alignments of top-scoring domains:
PF04424.4.fs: domain 1 of 1, from 42 to 167: score 275.8, E = 7.8e-80
                   *->aNvLiLkpkvtRyaeEliRLppkkevvTseeLvelLvDvlLqvkpkE
                      +NvL+L++kv+        Lpp++e++T+e+L+e+L+D++L++kpkE
    KIAA1164    42    LNVLLLAWKVK--------LPPMMEIITAEQLMEYLGDYMLDAKPKE 80   

                   kdEglkenfeqNiqdlldlLpkLhtGLdVNvkFnRkYLivmtGnvLLaCg
                   ++E++++n+eqN++d++++L+kL+tGLdVNv+F+               g
    KIAA1164    81 ISEIQRLNYEQNMSDAMAILHKLQTGLDVNVRFT---------------G 115  

                   iddFEyTpElsIFdLlnvpLYHGWlvDpqideNiveaigklSYnelvekl
                   +++FEyTpE+++FdLl++pLYHGWlvDpqid+ iv+a+g++SYn+lvek+
    KIAA1164   116 VRVFEYTPECIVFDLLDIPLYHGWLVDPQIDD-IVKAVGNCSYNQLVEKI 164  

                   vql<-*
                   +++   
    KIAA1164   165 ISC    167  

PF04424.4.ls: domain 1 of 1, from 42 to 167: score 277.6, E = 2.2e-80
                   *->aNvLiLkpkvtRyaeEliRLppkkevvTseeLvelLvDvlLqvkpkE
                      +NvL+L++kv+        Lpp++e++T+e+L+e+L+D++L++kpkE
    KIAA1164    42    LNVLLLAWKVK--------LPPMMEIITAEQLMEYLGDYMLDAKPKE 80   

                   kdEglkenfeqNiqdlldlLpkLhtGLdVNvkFnRkYLivmtGnvLLaCg
                   ++E++++n+eqN++d++++L+kL+tGLdVNv+F+               g
    KIAA1164    81 ISEIQRLNYEQNMSDAMAILHKLQTGLDVNVRFT---------------G 115  

                   iddFEyTpElsIFdLlnvpLYHGWlvDpqideNiveaigklSYnelvekl
                   +++FEyTpE+++FdLl++pLYHGWlvDpqid+ iv+a+g++SYn+lvek+
    KIAA1164   116 VRVFEYTPECIVFDLLDIPLYHGWLVDPQIDD-IVKAVGNCSYNQLVEKI 164  

                   vql<-*
                   +++   
    KIAA1164   165 ISC    167  

//