hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-19180868/chunk_1/iprscan-20080501-19180868.nocrc
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Query sequence: KIAA1169
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model     Description                                   Score    E-value  N 
--------  -----------                                   -----    ------- ---
PF00520.21.ls Ion transport protein                         226.6      5e-65   2
PF00520.21.fs Ion transport protein                         223.0    6.1e-64   2

Parsed for domains:
Model     Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------  ------- ----- -----    ----- -----      -----  -------
PF00520.21.fs   1/2     183   360 ..     1   224 []   101.3  6.1e-28
PF00520.21.ls   1/2     183   360 ..     1   224 []   103.1  7.5e-28
PF00520.21.fs   2/2     518   727 ..     1   224 []   121.7  1.3e-33
PF00520.21.ls   2/2     518   727 ..     1   224 []   123.5  5.6e-34

Alignments of top-scoring domains:
PF00520.21.fs: domain 1 of 2, from 183 to 360: score 101.3, E = 6.1e-28
                   *->ildyvftviFtlEmllkiialgfklhsriafkYlrspwNilDflvvl
                       l+++  ++ ++E ++k++ lg+       ++++r+   ++   v +
    KIAA1169   183    TLELFALMVVVFELCMKLRWLGL-------HTFIRHKRTMVKTSVLV 222  

                   pslislilsllgggsegdlyvreskdstlsegspgllsvlrllRllRvLR
                   + +++ i++l+ ++s+                    ++v r+lR +    
    KIAA1169   223 VQFVEAIVVLVRQMSH--------------------VRVTRALRCI---- 248  

                   llrlirrapglfRWelrtlWelnslgrslksllnvllllllllfiFaiig
                   +l  +r+  g      r+   l+ +++sl++ +++lllll++++iFai+g
    KIAA1169   249 FLVDCRYCGG-----VRRN--LRQIFQSLPPFMDILLLLLFFMIIFAILG 291  

                   vqlFggklnkccnpingntnFdsfgnaflwlFqtmTteGwgdvmpdtlag
                   ++lF  ++         ++ F++  n++ +lF+++Tt +++dvm+ +++ 
    KIAA1169   292 FYLFSPNPS--------DPYFSTLENSIVSLFVLLTTANFPDVMMPSYSR 333  

                   tvlgyiyfvsfiilgsflllNLfiavi<-*
                   +++++++f+++  +  ++++NL++av+   
    KIAA1169   334 NPWSCVFFIVYLSIELYFIMNLLLAVV    360  

PF00520.21.ls: domain 1 of 2, from 183 to 360: score 103.1, E = 7.5e-28
                   *->ildyvftviFtlEmllkiialgfklhsriafkYlrspwNilDflvvl
                       l+++  ++ ++E ++k++ lg+       ++++r+   ++   v +
    KIAA1169   183    TLELFALMVVVFELCMKLRWLGL-------HTFIRHKRTMVKTSVLV 222  

                   pslislilsllgggsegdlyvreskdstlsegspgllsvlrllRllRvLR
                   + +++ i++l+ ++s+                    ++v r+lR +    
    KIAA1169   223 VQFVEAIVVLVRQMSH--------------------VRVTRALRCI---- 248  

                   llrlirrapglfRWelrtlWelnslgrslksllnvllllllllfiFaiig
                   +l  +r+  g      r+   l+ +++sl++ +++lllll++++iFai+g
    KIAA1169   249 FLVDCRYCGG-----VRRN--LRQIFQSLPPFMDILLLLLFFMIIFAILG 291  

                   vqlFggklnkccnpingntnFdsfgnaflwlFqtmTteGwgdvmpdtlag
                   ++lF  ++         ++ F++  n++ +lF+++Tt +++dvm+ +++ 
    KIAA1169   292 FYLFSPNPS--------DPYFSTLENSIVSLFVLLTTANFPDVMMPSYSR 333  

                   tvlgyiyfvsfiilgsflllNLfiavi<-*
                   +++++++f+++  +  ++++NL++av+   
    KIAA1169   334 NPWSCVFFIVYLSIELYFIMNLLLAVV    360  

PF00520.21.fs: domain 2 of 2, from 518 to 727: score 121.7, E = 1.3e-33
                   *->ildyvftviFtlEmllkiialgfklhsriafkYlrspwNilDflvvl
                      +  +vf +i+ +E +lk+ +lg+         Yl s+wN++Df v++
    KIAA1169   518    WSYLVFLTIYGVELFLKVAGLGP-------VEYLSSGWNLFDFSVTV 557  

                   pslislilsllgggsegdlyvreskdstlsegspgllsvlrllRllRvLR
                   +++++l+   l+++                      + ++ +lR l    
    KIAA1169   558 FAFLGLLALALNMEP---------------------FYFIVVLRPLQ--- 583  

                   llrlirrapglfRWelrtlWelnslgrslksllnvllllllllfiFaiig
                   llrl+++ ++     +r++  l +++  l+++++++l ll++ + Fai+g
    KIAA1169   584 LLRLFKLKER-----YRNV--LDTMFELLPRMASLGLTLLIFYYSFAIVG 626  

                   vqlFggklnkcc........................npingntnFdsfgn
                   + +F+g+ ++ c+++++  +   + +++ ++ +  +++ ++ +nFd+++n
    KIAA1169   627 MEFFCGIVFPNCcntstvadayrwrnhtvgnrtvveEGYYYLNNFDNILN 676  

                   aflwlFqtmTteGwgdvmpdtl.agtvlgyiyfvsfiilgsflllNLfia
                   +f +lF +    +w  +m  + + ++ ++ +yf++f+i+ + +++ +++a
    KIAA1169   677 SFVTLFELTVVNNWYIIMEGVTsQTSHWSRLYFMTFYIVTM-VVMTIIVA 725  

                   vi<-*
                    i   
    KIAA1169   726 FI    727  

PF00520.21.ls: domain 2 of 2, from 518 to 727: score 123.5, E = 5.6e-34
                   *->ildyvftviFtlEmllkiialgfklhsriafkYlrspwNilDflvvl
                      +  +vf +i+ +E +lk+ +lg+         Yl s+wN++Df v++
    KIAA1169   518    WSYLVFLTIYGVELFLKVAGLGP-------VEYLSSGWNLFDFSVTV 557  

                   pslislilsllgggsegdlyvreskdstlsegspgllsvlrllRllRvLR
                   +++++l+   l+++                      + ++ +lR l    
    KIAA1169   558 FAFLGLLALALNMEP---------------------FYFIVVLRPLQ--- 583  

                   llrlirrapglfRWelrtlWelnslgrslksllnvllllllllfiFaiig
                   llrl+++ ++     +r++  l +++  l+++++++l ll++ + Fai+g
    KIAA1169   584 LLRLFKLKER-----YRNV--LDTMFELLPRMASLGLTLLIFYYSFAIVG 626  

                   vqlFggklnkcc........................npingntnFdsfgn
                   + +F+g+ ++ c+++++  +   + +++ ++ +  +++ ++ +nFd+++n
    KIAA1169   627 MEFFCGIVFPNCcntstvadayrwrnhtvgnrtvveEGYYYLNNFDNILN 676  

                   aflwlFqtmTteGwgdvmpdtl.agtvlgyiyfvsfiilgsflllNLfia
                   +f +lF +    +w  +m  + + ++ ++ +yf++f+i+ + +++ +++a
    KIAA1169   677 SFVTLFELTVVNNWYIIMEGVTsQTSHWSRLYFMTFYIVTM-VVMTIIVA 725  

                   vi<-*
                    i   
    KIAA1169   726 FI    727  

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