hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-19195044/chunk_1/iprscan-20080501-19195044.nocrc
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Query sequence: KIAA1170
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF07923.4.ls N1221-like protein                             507.5   1.4e-149   1
PF07923.4.fs N1221-like protein                             505.7   4.7e-149   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF07923.4.fs   1/1      37   358 ..     1   385 []   505.7 4.7e-149
PF07923.4.ls   1/1      37   358 ..     1   385 []   507.5 1.4e-149

Alignments of top-scoring domains:
PF07923.4.fs: domain 1 of 1, from 37 to 358: score 505.7, E = 4.7e-149
                   *->eaarlekrlsspassqpaldfeltdfdgleDELsEwFdytfWeylel
                      ea+r ++r+s++++++p+l+fe+ d dg+++ELsE+++yt  e+le+
    KIAA1170    37    EAFRSQRRESEGSVDCPTLEFEYGDADGHAAELSELYSYT--ENLEF 81   

                   gqnkkcFekLRkydqpslfsedenyqsldldqkRnfvlkLldeLevssrs
                   + n++cFe+    d+ ++++ +e + +l++d+++ +++ Lld+Lev+sr+
    KIAA1170    82 TNNRRCFEE----DFKTQVQGKE-WLELEEDAQKAYIMGLLDRLEVVSRE 126  

                   lrnkalrallYIAqGtfaevvkaaLPnfadhkvrtSieehlqsiRrNvll
                    r+k++ra+lY+AqGtf+e+              +S+ ++l++ R+N++l
    KIAA1170   127 RRLKVARAVLYLAQGTFGEC--------------DSEVDVLHWSRYNCFL 162  

                   LlelgllseivelFkkeiedgrisKAsaracRdsnlnlardteKWRTRQL
                   L+++g++s+++el+++ei+++++   +++a R++++++a++te       
    KIAA1170   163 LYQMGTFSTFLELLHMEIDNSQA---CSSALRKPAVSIADSTE------- 202  

                   PTmVDNElLrvlltiLYfitevildeRendeeevdDLetRkafiaelneP
                           Lrvll+++Y+++e+i+ eRe d++ ++  ++R++f++el+++
    KIAA1170   203 --------LRVLLSVMYLMVENIRLERETDPCGWR--TARETFRTELSFS 242  

                   veNgepLvefLtdmiekfrwgsDKrlhfpitqvGttfGiPGaanqhrmLm
                    +N+ep++ +L++m++kf++g+  ++hfpi                    
    KIAA1170   243 MHNEEPFALLLFSMVTKFCSGL--APHFPI-------------------- 270  

                   kkvilLLfKvllLqfGgfEelsvlKeeKrsiagLhnikedsikveksmla
                   kkv+lLL+Kv+++++GgfE+l+ lK +Kr+ +gL+++ edsi+v+ksm+a
    KIAA1170   271 KKVLLLLWKVVMFTLGGFEHLQTLKVQKRAELGLPPLAEDSIQVVKSMRA 320  

                   aSPldyeafReeitrApppsrFpsrgmpasklpldvDn<-*
                   aSP+ y+ ++ e ++Appps+ + r++++++l++++D+   
    KIAA1170   321 ASPPSYTLDLGESQLAPPPSKLRGRRGSRRQLLTKQDS    358  

PF07923.4.ls: domain 1 of 1, from 37 to 358: score 507.5, E = 1.4e-149
                   *->eaarlekrlsspassqpaldfeltdfdgleDELsEwFdytfWeylel
                      ea+r ++r+s++++++p+l+fe+ d dg+++ELsE+++yt  e+le+
    KIAA1170    37    EAFRSQRRESEGSVDCPTLEFEYGDADGHAAELSELYSYT--ENLEF 81   

                   gqnkkcFekLRkydqpslfsedenyqsldldqkRnfvlkLldeLevssrs
                   + n++cFe+    d+ ++++ +e + +l++d+++ +++ Lld+Lev+sr+
    KIAA1170    82 TNNRRCFEE----DFKTQVQGKE-WLELEEDAQKAYIMGLLDRLEVVSRE 126  

                   lrnkalrallYIAqGtfaevvkaaLPnfadhkvrtSieehlqsiRrNvll
                    r+k++ra+lY+AqGtf+e+              +S+ ++l++ R+N++l
    KIAA1170   127 RRLKVARAVLYLAQGTFGEC--------------DSEVDVLHWSRYNCFL 162  

                   LlelgllseivelFkkeiedgrisKAsaracRdsnlnlardteKWRTRQL
                   L+++g++s+++el+++ei+++++   +++a R++++++a++te       
    KIAA1170   163 LYQMGTFSTFLELLHMEIDNSQA---CSSALRKPAVSIADSTE------- 202  

                   PTmVDNElLrvlltiLYfitevildeRendeeevdDLetRkafiaelneP
                           Lrvll+++Y+++e+i+ eRe d++ ++  ++R++f++el+++
    KIAA1170   203 --------LRVLLSVMYLMVENIRLERETDPCGWR--TARETFRTELSFS 242  

                   veNgepLvefLtdmiekfrwgsDKrlhfpitqvGttfGiPGaanqhrmLm
                    +N+ep++ +L++m++kf++g+  ++hfpi                    
    KIAA1170   243 MHNEEPFALLLFSMVTKFCSGL--APHFPI-------------------- 270  

                   kkvilLLfKvllLqfGgfEelsvlKeeKrsiagLhnikedsikveksmla
                   kkv+lLL+Kv+++++GgfE+l+ lK +Kr+ +gL+++ edsi+v+ksm+a
    KIAA1170   271 KKVLLLLWKVVMFTLGGFEHLQTLKVQKRAELGLPPLAEDSIQVVKSMRA 320  

                   aSPldyeafReeitrApppsrFpsrgmpasklpldvDn<-*
                   aSP+ y+ ++ e ++Appps+ + r++++++l++++D+   
    KIAA1170   321 ASPPSYTLDLGESQLAPPPSKLRGRRGSRRQLLTKQDS    358  

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