hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-19230895/chunk_1/iprscan-20080501-19230895.nocrc
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Query sequence: KIAA1172
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00076.12.fs RNA recognition motif. (a.k.a. RRM, RBD, or     45.0    7.3e-12   1
PF00076.12.ls RNA recognition motif. (a.k.a. RRM, RBD, or     46.9    6.5e-11   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00076.12.fs   1/1     314   381 ..     1    74 []    45.0  7.3e-12
PF00076.12.ls   1/1     314   381 ..     1    74 []    46.9  6.5e-11

Alignments of top-scoring domains:
PF00076.12.fs: domain 1 of 1, from 314 to 381: score 45.0, E = 7.3e-12
                   *->lfVgNLppdtteedLkdlFskfGpiesikivrDttretgrskGfaFV
                      l+Vg L + tt++d+  l ++fGpiesi++++        ++G+a++
    KIAA1172   314    LWVGQLDKRTTQQDVASLLEEFGPIESINMIP--------PRGCAYI 352  

                   eFedeedAekAldalnG..kelggrelrv<-*
                    +    dA +Al++l  ++++++++ +++   
    KIAA1172   353 VMVHRQDAYRALQKLSRgnYKVNQKSIKI    381  

PF00076.12.ls: domain 1 of 1, from 314 to 381: score 46.9, E = 6.5e-11
                   *->lfVgNLppdtteedLkdlFskfGpiesikivrDttretgrskGfaFV
                      l+Vg L + tt++d+  l ++fGpiesi++++        ++G+a++
    KIAA1172   314    LWVGQLDKRTTQQDVASLLEEFGPIESINMIP--------PRGCAYI 352  

                   eFedeedAekAldalnG..kelggrelrv<-*
                    +    dA +Al++l  ++++++++ +++   
    KIAA1172   353 VMVHRQDAYRALQKLSRgnYKVNQKSIKI    381  

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