hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080501/iprscan-20080501-19244519/chunk_1/iprscan-20080501-19244519.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA1173 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF03062.9.ls MBOAT family -12.2 2.4e-05 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF03062.9.ls 1/1 1 280 [. 1 385 [] -12.2 2.4e-05 Alignments of top-scoring domains: PF03062.9.ls: domain 1 of 1, from 1 to 280: score -12.2, E = 2.4e-05 *->illvsyietglldllgtlgisyltfklislifdvydgkgkkselrtd +++ +++ + +++++s++++ + + KIAA1173 1 QEVLFHGGSSFT-----------VLRCTSFALESCAH---------- 26 qkeiltlrllsykvvgslerwevavalstkptrsilfqvefvmlafvsqv KIAA1173 - -------------------------------------------------- - pekrfllrvlrkmpslleflaYlfffptllsGPilryrdfikfleklvsw +++sl+++l Y f+ p +++GPi+++ +f +++ + + KIAA1173 27 ---------PDRHYSLADLLKYNFYLPFFFFGPIMTFDRFHAQVSQVEPV 67 dylpkkrpsllapavrllflgflykvliayllskiavkllttppfmsraf + ++ + +++ ++ + + + ++ ++++ + + +f++r KIAA1173 68 RREGELWHIRAQAGLSVVAI----MAVDIFFHFFYILTIPSDLKFANR-- 111 llrfsviyailymyayslylf.fDFaGyslfaiaisllfGfgfngydkng +l+++ays +++++ ++ + lfG+ n+ KIAA1173 112 -----LPDSALAGLAYSNLVYdW---------VKAAVLFGVV------NT 141 narwdritpenfnkpvensksikefwrrWNislskWLrrYvYirlgGsmm +a +d +p+ ++k++ ++ +++++ ++WL YvY gG KIAA1173 142 VACLDHLDPPQPPKCI--TALYVFAETHFDRGINDWLCKYVYNHIGGE-- 187 kKKlikkgklrkflatlatFllsAvWHGlywgYilwgllhalllileraf + + ++at atF++ +W G ++lw +l++++l +e + KIAA1173 188 -----HSAVIPELAATVATFAITTLWLGPCDIVYLWSFLNCFGLNFELWM 232 rrlfrkifl........l.srrrllllnvifwlfaflgtslffslyls<- +l + +l + + + +++ rr +l++++ ++a+++ +l+ +++l KIAA1173 233 QKLAEWGPLarieaslsVqMSRRVRALFGAMNFWAIIMYNLVSLNSLK 280 * KIAA1173 - - //