hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-19262038/chunk_1/iprscan-20080501-19262038.nocrc
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Query sequence: KIAA1174
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF04791.6.fs LMBR1-like membrane protein                    554.2   1.2e-163   2
PF04791.6.ls LMBR1-like membrane protein                    441.2   1.3e-129   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF04791.6.fs   1/2      62   293 ..     1   327 [.   398.9 6.9e-117
PF04791.6.ls   1/1      62   430 .]     1   662 []   441.2 1.3e-129
PF04791.6.fs   2/2     294   399 ..   413   525 ..   155.3  1.5e-43

Alignments of top-scoring domains:
PF04791.6.fs: domain 1 of 2, from 62 to 293: score 398.9, E = 6.9e-117
                   *->illlllailylfsyilltrYkrpreqetlsadededavvnristilv
                      i +ll+a+ly++++i+ltr+k+p+e++t   ++deda+vn+i++ l+
    KIAA1174    62    ISTLLFATLYILCHIFLTRFKKPAEFTT---VDDEDATVNKIALELC 105  

                   tfgLavaliavlLLPvDVasTlyrkCvedrrrinevllsypgsyvpeaea
                   tf+La+al+avlLLP++++s             nevlls+p++y      
    KIAA1174   106 TFTLAIALGAVLLLPFSIIS-------------NEVLLSLPRNY------ 136  

                   yvqwlngslilgLWnlvYlfsnlllffllPFvyffyEskgFtglkKGaqi
                   y+qwlngsli+gLWnlv+lfsnl+l+fl+PF+yff+Es+gF+g++KG  +
    KIAA1174   137 YIQWLNGSLIHGLWNLVFLFSNLSLIFLMPFAYFFTESEGFAGSRKG--V 184  

                   kaalyetlvyylllALllLvlliVasalDFSvRHLASAtStFPtSWqFSN
                   + ++yet+v+++ll+Ll+L++++Vasa+                      
    KIAA1174   185 LGRVYETVVMLMLLTLLVLGMVWVASAI---------------------- 212  

                   tqPCidnnalqesekvkllfeesltdlwenflpyvyScisfwGllLllil
                       +d+n+++         +esl+d+we++lpy+yScisf+G+lLll++
    KIAA1174   213 ----VDKNKAN---------RESLYDFWEYYLPYLYSCISFLGVLLLLVC 249  

                   tgyGlvrlPlslwkllvreyalrkayfkaakLesekaeaeekvddilesv
                   t+ Gl+r++++++kllv+                                
    KIAA1174   250 TPLGLARMFSVTGKLLVK-------------------------------- 267  

                   sllsprlledvneqrsknatelsklsrelq<-*
                       prlled++eq++++a+e+++l+r+++   
    KIAA1174   268 ----PRLLEDLEEQLYCSAFEEAALTRRIC    293  

PF04791.6.ls: domain 1 of 1, from 62 to 430: score 441.2, E = 1.3e-129
                   *->illlllailylfsyilltrYkrpreqetlsadededavvnristilv
                      i +ll+a+ly++++i+ltr+k+p+e++t   ++deda+vn+i++ l+
    KIAA1174    62    ISTLLFATLYILCHIFLTRFKKPAEFTT---VDDEDATVNKIALELC 105  

                   tfgLavaliavlLLPvDVasTlyrkCvedrrrinevllsypgsyvpeaea
                   tf+La+al+avlLLP++++s             nevlls+p++y      
    KIAA1174   106 TFTLAIALGAVLLLPFSIIS-------------NEVLLSLPRNY------ 136  

                   yvqwlngslilgLWnlvYlfsnlllffllPFvyffyEskgFtglkKGaqi
                   y+qwlngsli+gLWnlv+lfsnl+l+fl+PF+yff+Es+gF+g++KG  +
    KIAA1174   137 YIQWLNGSLIHGLWNLVFLFSNLSLIFLMPFAYFFTESEGFAGSRKG--V 184  

                   kaalyetlvyylllALllLvlliVasalDFSvRHLASAtStFPtSWqFSN
                   + ++yet+v+++ll+Ll+L++++Vasa+                      
    KIAA1174   185 LGRVYETVVMLMLLTLLVLGMVWVASAI---------------------- 212  

                   tqPCidnnalqesekvkllfeesltdlwenflpyvyScisfwGllLllil
                       +d+n+++         +esl+d+we++lpy+yScisf+G+lLll++
    KIAA1174   213 ----VDKNKAN---------RESLYDFWEYYLPYLYSCISFLGVLLLLVC 249  

                   tgyGlvrlPlslwkllvreyalrkayfkaakLesekaeaeekvddilesv
                   t+ Gl+r++++++kllv+                                
    KIAA1174   250 TPLGLARMFSVTGKLLVK-------------------------------- 267  

                   sllsprlledvneqrsknatelsklsrelqkaassnsqeedsaakgrtgr
                       prlled++eq++++a+e+++l+r+++                    
    KIAA1174   268 ----PRLLEDLEEQLYCSAFEEAALTRRIC-------------------- 293  

                   kivkseeklllqheedlkslqtlyrkkaqwevswatklfLedvakkessk
                                                                     
    KIAA1174     - -------------------------------------------------- -    

                   krkeksefyRqrkeYsttScwlksdmeilkkrlravkserkllEkrrkls
                                  ++tScwl++dme+l+++++a++++r+llEkrrk+s
    KIAA1174   294 ---------------NPTSCWLPLDMELLHRQVLALQTQRVLLEKRRKAS 328  

                   aiqrslvyplamltlLvltflsillvvtntlsllvvaselplftvfptLs
                   a+qr+l+yplaml+lLvlt ls+l+v++++l+ll++++++p+++      
    KIAA1174   329 AWQRNLGYPLAMLCLLVLTGLSVLIVAIHILELLIDEAAMPRGM------ 372  

                   prlnviglaslstfgllgaavevllIfYLmvssvvGiyslpfklvfirly
                    +++++g+ s+s++g++ga+++v+lI+Y      +G  slp+    + + 
    KIAA1174   373 -QGTSLGQVSFSKLGSFGAVIQVVLILY-----PSGNPSLPL----FSKP 412  

                   rlkrgdttmtailincgilLvivLHtSYlrsaLPvcsnflGltrfdllgs
                                       v                        d+   
    KIAA1174   413 --------------------V----------------------SWDSR-- 418  

                   fgeifGketqllklmghlDviAPKDqCtvtRtYvFLHKFsliwlgyfyiv
                   ++                                                
    KIAA1174   419 PS------------------------------------------------ 420  

                   llynilFvilttlsL<-*
                         + +l+ l L   
    KIAA1174   421 -----TSWTLSPLGL    430  

PF04791.6.fs: domain 2 of 2, from 294 to 399: score 155.3, E = 1.5e-43
                   *->sttScwlksdmeilkkrlravkserkllEkrrklsaiqrslvyplam
                      ++tScwl++dme+l+++++a++++r+llEkrrk+sa+qr+l+yplam
    KIAA1174   294    NPTSCWLPLDMELLHRQVLALQTQRVLLEKRRKASAWQRNLGYPLAM 340  

                   ltlLvltflsillvvtntlsllvvaselplftvfptLsprlnviglasls
                   l+lLvlt ls+l+v++++l+ll++++++p+++       +++++g+ s+s
    KIAA1174   341 LCLLVLTGLSVLIVAIHILELLIDEAAMPRGM-------QGTSLGQVSFS 383  

                   tfgllgaavevllIfY<-*
                   ++g++ga+++v+lI+Y   
    KIAA1174   384 KLGSFGAVIQVVLILY    399  

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