HUGE

Gene/Protein Characteristic Table for KIAA1175

Link to : GTOP \| SWISS-PROT/TrEMBL \| GeneCards\| RefDIC
Features : DNA sequence \| Protein sequence \| Expression \| Mapping

Product ID :	ORK06259
Accession No. :	AB033001
Description :	Phosphofurin acidic cluster sorting protein 1.
HUGO Gene Name :	phosphofurin acidic cluster sorting protein 1 (PACS1)
Clone Name :	hg02720a [Vector Info]
Source :	Human adult brain

Features of the cloned DNA sequence	Description

Length: 3390 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis) for :
cloned DNA seq.
Warning for N-terminal truncation:
YES

Warning for coding interruption:
NO

Integrity of 3' end

Length of 3'UTR 1462 bp

Genome contig ID gi51511727f_65643792
PolyA signal sequence
(AATAAA,-23)
+----*----+----*----+----*----+----
GGTTTTTCATTCAATAAATTGGTGATTTCTTACCG
Flanking genome sequence
(124999 - 125048)
----+----*----+----*----+----*----+----*----+----*
ACTGCCTTGGGCTTCTATGCCCCCTCACTGTGCCACAGGAGCTGCCCAAC

Ensembl ContigView (Add our DAS server as a DAS source)

Chr f/r start end exon identity class

ContigView(URL based/DAS) 11 f 65743785 65768789 17 99.4 Terminal No-hit

Features of the protein sequence	Description

Length: 641 aa

Result of homology search against nr database (FASTA output, Multiple alignment)

Entry	ID%	Protein	Source
EAW74506	100.0	phosphofurin ac...	Homo sapiens
Q6VY07	100.0	Phosphofurin ac...	Homo sapiens
XP_001170735	99.8	phosphofurin ac...	Pan troglodytes
XP_001170754	99.8	phosphofurin ac...	Pan troglodytes
XP_001170787	99.8	phosphofurin ac...	Pan troglodytes

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of homology search against other HUGE database (FASTA output, Multiple alignment)

Entry	Exp	ID%	HUGE_ID
AB011174	2.5e-41	55.4	KIAA0602

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of motif / domain search (InterProScan and SOSUI)

Motif_DB interpro_ID From To Entry Definition

None - - - - -

Motif_DB	interpro_ID	From	To	Entry	Definition
None	-	-	-	-	-

Prediction of transmembrane (TM) segments

Method No. N terminal transmembrane region C terminal type length

- - - - - - -

Method	No.	N terminal	transmembrane region	C terminal	type	length
-	-	-	-	-	-	-

Expression profile	Description

: RT-PCR-ELISA Description
: Experimental conditions

Primer_f
: TTCCCACCATCTTCCTGAGCA

Primer_r
: GCTGGAAGAACTTGATGTCAC

PCR conditions
: 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

RT-PCR-ELISA	Description

RH mapping information	Description

Chromosome No.

: 11

Experimental conditions

Panel name	: unigene
Primer_f	: -
Primer_r	: -
PCR product length	: -
PCR conditions	: -

How to obtain KIAA clone(s) Back to the HUGE Protein Database homepage

	cloned DNA seq.
Warning for N-terminal truncation:	YES
Warning for coding interruption:	NO

Length of 3'UTR	1462 bp
Genome contig ID	gi51511727f_65643792
PolyA signal sequence (AATAAA,-23)	+--------+--------+----*----+---- GGTTTTTCATTCAATAAATTGGTGATTTCTTACCG
Flanking genome sequence (124999 - 125048)	----+--------+--------+--------+--------+----* ACTGCCTTGGGCTTCTATGCCCCCTCACTGTGCCACAGGAGCTGCCCAAC

	Chr	f/r	start	end	exon	identity	class
ContigView(URL based/DAS)	11	f	65743785	65768789	17	99.4	Terminal No-hit

Primer_f	: TTCCCACCATCTTCCTGAGCA
Primer_r	: GCTGGAAGAACTTGATGTCAC
PCR conditions	: 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

Gene/Protein Characteristic Table for KIAA1175

Features of the cloned DNA sequence

Features of the protein sequence

Expression profile

RH mapping information