# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/hh05402a.fasta.huge -Q ../query/KIAA1179.ptfa ./tmplib.24314 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 KIAA1179, 1090 aa vs ./tmplib.24314 library 1986415 residues in 2037 sequences Expectation_n fit: rho(ln(x))= 4.6832+/-0.00541; mu= 17.4564+/- 0.368 mean_var=96.6872+/-21.572, 0's: 0 Z-trim: 5 B-trim: 0 in 0/40 Lambda= 0.130434 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 39, opt: 27, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2037) KIAA1638 ( 905 res) fj04819s1 ( 905) 208 50.6 1.2e-06 KIAA0590 ( 1468 res) hj02755 (1468) 185 46.5 3.2e-05 >>KIAA1638 ( 905 res) fj04819s1 (905 aa) initn: 168 init1: 96 opt: 208 Z-score: 211.4 bits: 50.6 E(): 1.2e-06 Smith-Waterman score: 212; 22.355% identity (50.699% similar) in 501 aa overlap (122-580:292-771) 100 110 120 130 140 KIAA11 QQEERAGELQESQGDGLAAISLYLKAGLPAKAARLVLTREELLANTELV--EHITAALIK :. . :. . .:.: . . ... : . KIAA16 VILAGSTKVPFAHKPLLLYNGELTCQTQSGKVNNIYLSTHGFLSNLKDTGPDELRPMLAQ 270 280 290 300 310 320 150 160 170 180 190 200 KIAA11 GELYERAGDLFE--KIHNPQKALECYRKGNAFMKAVELA-----RLAFPVEVVKLEEAWG . . .: .: .: .: : . : . .. ::.: :.. :..::. : KIAA16 NLMLKRFSDAWEMCRILNDEAAWNELARACLHHMEVEFAIRVYRRIGNVGIVMSLEQIKG 330 340 350 360 370 380 210 220 230 240 250 KIAA11 --------DHLVQ-QKQLDAAINHYIEARCSIKAIEAALGARQWKKAIYILDLQDRNTAS ::.. .. . : . :. . : : :.: ..: .:. . .. : KIAA16 IEDYNLLAGHLAMFTNDYNLAQDLYLASSCPIAALEMRRDLQHWDSALQLA----KHLAP 390 400 410 420 430 260 270 280 290 KIAA11 KYYPLVAQHYASLQE----YEIAEELYTKG----DRTKD------AIDMYTQAGRWEQAH :.....:: : : : : :: .. .: . .: . : ... KIAA16 DQIPFISKEYAIQLEFAGDYVNALAHYEKGITGDNKEHDEACLAGVAQMSIRMGDIRRGV 440 450 460 470 480 490 300 310 320 330 340 350 KIAA11 KLAMKCMRPEDVSVLYITQAQEMEKQGKYREAERLYVTVQEPDLAITMYKKHKLYDDMIR . :.: .: :: . .:.. .. :: .:: : : ..: . : . KIAA16 NQALK--HPS--RVLKRDCGAILENMKQFSEAAQLYEKGLYYDKAASVYIRSKNWAK--- 500 510 520 530 540 550 360 370 380 390 400 410 KIAA11 LVGKHHPDLLSDT-HLHLGKELEAEGRLQEAEYHYLEAQEWKATVNMYRAS-GLWEEAYR :: : . : ::. .: ::.:: .:: : .:..:.... .: . :.: KIAA16 -VGDLLPHVSSPKIHLQYAKAKEADGRYKEAVVAYENAKQWQSVIRIYLDHLNNPEKAVN 560 570 580 590 600 420 430 440 450 460 470 KIAA11 VARTQGGANAHKHVAYLWAKSLGGE-AAVRLLNKLGLLEAAVDHAADNCSFEFAFELSRL ..: . .. : :: .. . :: .:...: . : : .. ..:. .. . KIAA16 IVRETQSLDGAKMVARFFLQ-LGDYGSAIQFLVMSKCNNEAFTLAQQHNKMEIYADI--I 610 620 630 640 650 660 480 490 500 510 520 KIAA11 ALKHKTPEVHLKYAMFLEDEGKFEEAEAEFIRAGKPKEAVLMFVHNQDWE-------AAQ . . : : . . :...: : .. .: :. :. ..:. :.. . : : . KIAA16 GSEDTTNEDYQSIALYFEGEKRYLQAGKFFLLCGQYSRALKHFLKCPSSEDNVAIEMAIE 670 680 690 700 710 720 530 540 550 560 570 580 KIAA11 RVAEAHDPDSVAEVLVGQARGALEEKDFQKAEGLLLRAQRPGLALNYYKEAGLWSDALRI :..:.: . ... :. . : :. . : :.: .::. :.:: KIAA16 TVGQAKD-ELLTNQLIDHLLG--ENDGMPKDAKYLFRLY---MALKQYREAAQTAIIIAR 730 740 750 760 770 780 590 600 610 620 630 640 KIAA11 CKDYVPSQLEALQEEYEREATKKGARGVEGFVEQARHWEQAGEYSRAVDCYLKVRDSGNS KIAA16 EEQSAGNYRNAHDVLFSMYAELKSQKIKIPSEMATNLMILHSYILVKIHVKNGDHMKGAR 790 800 810 820 830 840 >>KIAA0590 ( 1468 res) hj02755 (1468 aa) initn: 141 init1: 80 opt: 185 Z-score: 185.7 bits: 46.5 E(): 3.2e-05 Smith-Waterman score: 226; 23.226% identity (51.613% similar) in 465 aa overlap (192-646:801-1237) 170 180 190 200 210 KIAA11 KIHNPQKALECYRKGNAFMKAVELARLAFPVEVVKLEEAWGDHL---VQQKQLDAAINHY ....: : .: . :. ..::.: KIAA05 LEDCDKATRDAMLHFSFFVTIGDMDEAFKSIKLIKSEAVWENMARMCVKTQRLDVA---- 780 790 800 810 820 220 230 240 250 260 270 KIAA11 IEARCSIKAIEAALGARQWKKAIYILDLQDRNTASKYYPLVAQHYASLQEYEIAEELYTK . . . : ::: ..: .:. : :: ..: : ::.:: : KIAA05 ---KVCLGNMGHARGARALREAEQEPELEAR---------VAVLATQLGMLEDAEQLYRK 830 840 850 860 870 280 290 300 310 320 330 KIAA11 GDRTKDAIDMYTQA-GRWEQAHKLAMKCMRPEDVSVLYITQAQEMEKQGKYREAERLYVT : .: .. . :: :::..: ..: . : . :. : : ..: .. .: : KIAA05 CKR-HDLLNKFYQAAGRWQEALQVAEHHDRVHLRST-YHRYAGHLEASADCSRALSYYEK 880 890 900 910 920 930 340 350 360 370 380 390 KIAA11 VQEPDLAITMYKKHKLYDDMIRLVGKHHPDLLSDTHLH--LGKELEAEGRLQEAEYHYLE . . . . : .:. : . . . ..: : .. ::..:... : ..: KIAA05 SDTHRFEVPRM----LSEDLPSL--ELYVNKMKDKTLWRWWAQYLESQGEMDAALHYYEL 940 950 960 970 980 400 410 420 430 440 450 KIAA11 AQEWKATVNMYRASGLWEEAYRVARTQGGANAHKHVAYLWAKSLGGEAAVRLLNKLGLLE :.. . : .. .: ..: ..: :. : :.: . .. ::.. .. .. KIAA05 ARDHFSLVRIHCFQGNVQKAAQIANETGNLAASYHLARQYESQEEVGQAVHFYTRAQAFK 990 1000 1010 1020 1030 1040 460 470 480 490 500 510 KIAA11 AAVDHAADNCSFEFAFELSRLALKHKTPEVHLKYAMFLEDEG-KFEEAEAEFIRAGKPKE :. .: . .: ::: ..:: .. : . :..: ....: . .::. .. KIAA05 NAIRLCKEN---GLDDQLMNLALL-SSPEDMIEVARYYEEKGVQMDRAVMLYHKAGHFSK 1050 1060 1070 1080 1090 1100 520 530 540 550 560 570 KIAA11 AVLMFVHNQDWEAAQRVAEAHDPDSVAEVLVGQARGALEEKDFQKAEGLLLRAQRPGLAL :. . .:.. : : .:: : : .:. . .:......: ::: :.. :: KIAA05 ALELAFATQQFVALQLIAEDLDETSDPALLARCSDFFIEHSQYERAVELLLAARKYQEAL 1110 1120 1130 1140 1150 1160 580 590 600 610 620 630 KIAA11 NYYKEAGLWSDALRICKDYVPSQLEALQEEYEREATKKGARGV--EGFVEQA-RHWEQAG . .. : : .. : :: .:: .. : .: . : ... ::: KIAA05 QLCLGQNMSITEEMAEKMTVAKDSSDLPEESRRELLEQIADCCMRQGSYHLATKKYTQAG 1170 1180 1190 1200 1210 1220 640 650 660 670 680 690 KIAA11 EYSRAVDCYLKVRDSGNSGLAEKCWMKAAELSIKFLPPQRNMEVVLAVGPQLIGIGKHSA . .:. :: :. KIAA05 NKLKAMRALLKSGDTEKITFFASVSRQKEIYIMAANYLQSLDWRKEPEIMKNIIGFYTKG 1230 1240 1250 1260 1270 1280 1090 residues in 1 query sequences 1986415 residues in 2037 library sequences Scomplib [34.26] start: Thu Dec 18 15:12:07 2008 done: Thu Dec 18 15:12:08 2008 Total Scan time: 0.700 Total Display time: 0.070 Function used was FASTA [version 34.26.5 April 26, 2007]