# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/hf00665as1.fasta.huge -Q ../query/KIAA1180.ptfa ./tmplib.24314 2
FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 KIAA1180, 360 aa
 vs ./tmplib.24314 library

1987145 residues in  2037 sequences
  Expectation_n fit: rho(ln(x))= 4.1535+/-0.00464; mu= 16.8882+/- 0.317
 mean_var=80.7910+/-19.069, 0's: 0 Z-trim: 1  B-trim: 0 in 0/40
 Lambda= 0.142690

FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 37, opt: 25, open/ext: -10/-2, width:  16
The best scores are:                                      opt bits E(2037)
KIAA1248  ( 368 res)   hh03309a                    ( 368) 1353 287.8   6e-79


>>KIAA1248  ( 368 res)   hh03309a                         (368 aa)
 initn: 1369 init1: 932 opt: 1353  Z-score: 1509.2  bits: 287.8 E(): 6e-79
Smith-Waterman score: 1464;  62.011% identity (81.006% similar) in 358 aa overlap (7-360:29-368)

                                     10        20        30        
KIAA11                       RRVPSLGKMPECWDGEHDIETPYGLLHVVIRGSPKGNR
                                   :. ::     :..::::: .  .. :.:: .:
KIAA12 RRDAAKRGEATMAELQEVQITEEKPLLPGQTPEAAK-THSVETPYGSVTFTVYGTPKPKR
               10        20        30         40        50         

       40        50        60        70        80        90        
KIAA11 PAILTYHDVGLNHKLCFNTFFNFEDMQEITKHFVVCHVDAPGQQVGASQFPQGYQFPSME
       ::::::::::::.: ::. .:.::::::: ..::  ::::::.. ::  :: :::.::..
KIAA12 PAILTYHDVGLNYKSCFQPLFQFEDMQEIIQNFVRVHVDAPGMEEGAPVFPLGYQYPSLD
      60        70        80        90       100       110         

      100       110       120       130       140       150        
KIAA11 QLAAMLPSVVQHFGFKYVIGIGVGAGAYVLAKFALIFPDLVEGLVLVNIDPNGKGWIDWA
       ::: :.: :.:...:. .::.:::::::.::..::  :: ::::::.:::::.:::.:::
KIAA12 QLADMIPCVLQYLNFSTIIGVGVGAGAYILARYALNHPDTVEGLVLINIDPNAKGWMDWA
     120       130       140       150       160       170         

      160       170       180       190       200       210        
KIAA11 ATKLSGLTSTLPDTVLSHLFSQEELVNNTELVQSYRQQIGNVVNQANLQLFWNMYNSRRD
       : ::.::::..:. .:.:::::::: .:.::.:.::. : .. :  :..:.:: ::.:::
KIAA12 AHKLTGLTSSIPEMILGHLFSQEELSGNSELIQKYRNIITHAPNLDNIELYWNSYNNRRD
     180       190       200       210       220       230         

      220       230       240       250       260       270        
KIAA11 LDINRPGTVPNAKTLRCPVMLVVGDNAPAEDGVVECNSKLDPTTTTFLKMADSGGLPQVT
       :...: : .    ::::::::::::.:: ::.::::::::::: :.::::::::: ::.:
KIAA12 LNFERGGDI----TLRCPVMLVVGDQAPHEDAVVECNSKLDPTQTSFLKMADSGGQPQLT
     240           250       260       270       280       290     

      280       290       300       310       320       330        
KIAA11 QPGKLTEAFKYFLQGMGYIAYLKDRRLSGGAVPSASMTRLARSRTASLTSASSVDGSRPQ
       ::::::::::::::::::.:             :. ::::.::::::::::.::::.: .
KIAA12 QPGKLTEAFKYFLQGMGYMA-------------SSCMTRLSRSRTASLTSAASVDGNRSR
         300       310                    320       330       340  

      340           350       360
KIAA11 ACTHSESSEG----LGQVNHTMEVSC
       . : :.:::.     :  .:::::::
KIAA12 SRTLSQSSESGTLSSGPPGHTMEVSC
            350       360        




360 residues in 1 query   sequences
1987145 residues in 2037 library sequences
 Scomplib [34.26]
 start: Thu Dec 18 15:12:10 2008 done: Thu Dec 18 15:12:10 2008
 Total Scan time:  0.360 Total Display time:  0.010

Function used was FASTA [version 34.26.5 April 26, 2007]