hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-19361138/chunk_1/iprscan-20080501-19361138.nocrc
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Query sequence: KIAA1180
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF03096.5.ls Ndr family                                     620.9     1e-183   1
PF03096.5.fs Ndr family                                     618.9   4.1e-183   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF03096.5.fs   1/1      16   298 ..     1   300 []   618.9 4.1e-183
PF03096.5.ls   1/1      16   298 ..     1   300 []   620.9   1e-183

Alignments of top-scoring domains:
PF03096.5.fs: domain 1 of 1, from 16 to 298: score 618.9, E = 4.1e-183
                   *->ehiietpcGsvhVtVyGdpkgrkkpvilTYHDlGlNHkSCFqglFns
                      eh+ietp+G +hV+++G+pkg ++p+ilTYHD+GlNHk CF+++Fn+
    KIAA1180    16    EHDIETPYGLLHVVIRGSPKG-NRPAILTYHDVGLNHKLCFNTFFNF 61   

                   PesmqeilekFciyHVdaPGqedgAasfpegypyPSlddLadmlpaVLdh
                    e+mqei+++F+++HVdaPGq++gA++fp+gy++PS+++La mlp+V++h
    KIAA1180    62 -EDMQEITKHFVVCHVDAPGQQVGASQFPQGYQFPSMEQLAAMLPSVVQH 110  

                   FslksvIGmGvGAGAYILaRFAlkhperVeGLVLinitpkaaGwiewfye
                   F++k+vIG+GvGAGAY+La+FAl +p++VeGLVL+ni+p+++Gwi+w+++
    KIAA1180   111 FGFKYVIGIGVGAGAYVLAKFALIFPDLVEGLVLVNIDPNGKGWIDWAAT 160  

                   KlssklLkyvGmtdllkdlllaHkFgkeelsnevpnsdkekiVqeYRkll
                   Kls       G+t++l+d++l+H+F++eel n   n++   +Vq+YR+++
    KIAA1180   161 KLS-------GLTSTLPDTVLSHLFSQEELVN---NTE---LVQSYRQQI 197  

                   kerlNpkNlqlyleaynsRrDLtierkgleettravtLkcpvlLvVGdkS
                    + +N++Nlql++++ynsRrDL+i+r+g+ +  +a+tL+cpv+LvVGd++
    KIAA1180   198 GNVVNQANLQLFWNMYNSRRDLDINRPGTVP--NAKTLRCPVMLVVGDNA 245  

                   PhvdavvecnskLdpkkttllkvadcGglVlqeqPgklteslklFlkGmG
                   P++d vvecnskLdp++tt+lk+ad+Ggl++++qPgklte++k+Fl+GmG
    KIAA1180   246 PAEDGVVECNSKLDPTTTTFLKMADSGGLPQVTQPGKLTEAFKYFLQGMG 295  

                   ylp<-*
                   y++   
    KIAA1180   296 YIA    298  

PF03096.5.ls: domain 1 of 1, from 16 to 298: score 620.9, E = 1e-183
                   *->ehiietpcGsvhVtVyGdpkgrkkpvilTYHDlGlNHkSCFqglFns
                      eh+ietp+G +hV+++G+pkg ++p+ilTYHD+GlNHk CF+++Fn+
    KIAA1180    16    EHDIETPYGLLHVVIRGSPKG-NRPAILTYHDVGLNHKLCFNTFFNF 61   

                   PesmqeilekFciyHVdaPGqedgAasfpegypyPSlddLadmlpaVLdh
                    e+mqei+++F+++HVdaPGq++gA++fp+gy++PS+++La mlp+V++h
    KIAA1180    62 -EDMQEITKHFVVCHVDAPGQQVGASQFPQGYQFPSMEQLAAMLPSVVQH 110  

                   FslksvIGmGvGAGAYILaRFAlkhperVeGLVLinitpkaaGwiewfye
                   F++k+vIG+GvGAGAY+La+FAl +p++VeGLVL+ni+p+++Gwi+w+++
    KIAA1180   111 FGFKYVIGIGVGAGAYVLAKFALIFPDLVEGLVLVNIDPNGKGWIDWAAT 160  

                   KlssklLkyvGmtdllkdlllaHkFgkeelsnevpnsdkekiVqeYRkll
                   Kls       G+t++l+d++l+H+F++eel n   n++   +Vq+YR+++
    KIAA1180   161 KLS-------GLTSTLPDTVLSHLFSQEELVN---NTE---LVQSYRQQI 197  

                   kerlNpkNlqlyleaynsRrDLtierkgleettravtLkcpvlLvVGdkS
                    + +N++Nlql++++ynsRrDL+i+r+g+ +  +a+tL+cpv+LvVGd++
    KIAA1180   198 GNVVNQANLQLFWNMYNSRRDLDINRPGTVP--NAKTLRCPVMLVVGDNA 245  

                   PhvdavvecnskLdpkkttllkvadcGglVlqeqPgklteslklFlkGmG
                   P++d vvecnskLdp++tt+lk+ad+Ggl++++qPgklte++k+Fl+GmG
    KIAA1180   246 PAEDGVVECNSKLDPTTTTFLKMADSGGLPQVTQPGKLTEAFKYFLQGMG 295  

                   ylp<-*
                   y++   
    KIAA1180   296 YIA    298  

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