HUGE

Gene/Protein Characteristic Table for KIAA1188

Link to : Rouge \| GTOP \| SWISS-PROT/TrEMBL \| GeneCards\| RefDIC
Features : DNA sequence \| Protein sequence \| Expression \| Mapping

Product ID :	ORK04583
Accession No. :	AB033014
Description :	Calmin.
HUGO Gene Name :	calmin (calponin-like, transmembrane) (CLMN)
Clone Name :	hg02860a [Vector Info]
Source :	Human adult brain

Features of the cloned DNA sequence	Description

Length: 1018 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis) for :
cloned DNA seq.
Warning for N-terminal truncation:
YES

Warning for coding interruption:
NO

Integrity of 3' end

Length of 3'UTR 0 bp

Genome contig ID gi51511730r_94632710
PolyA signal sequence
(AAGAAA,-32)
+----*----+----*----+----*----+----
TAGAAGAAAATGTAACGAAAGAATCAATCAGTAGT
Flanking genome sequence
(100000 - 99951)
----+----*----+----*----+----*----+----*----+----*
AAAAAAAAGGAAAAAAGGAAACATGTGGACCACGTAGAAAGTTCACTATT

Ensembl ContigView (Add our DAS server as a DAS source)

Chr f/r start end exon identity class

ContigView(URL based/DAS) 14 r 94732710 94739870 2 100.0 Perfect prediction

Features of the protein sequence	Description

Length: 339 aa

Result of homology search against nr database (FASTA output, Multiple alignment)

Entry	Exp	ID%	Protein	Source
BAB14036	2.4e-120	100.0	unnamed protein...	Homo sapiens
AAH32699	2.9e-120	100.0	CLMN protein [H...	Homo sapiens
AAH25251	2.9e-120	100.0	CLMN protein [H...	Homo sapiens
CAB55978	3.5e-120	100.0	hypothetical pr...	Homo sapiens
BAB15087	3.6e-120	100.0	unnamed protein...	Homo sapiens

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of homology search against other HUGE database (FASTA output)
No significant homologues

Result of motif / domain search (InterProScan and SOSUI)

Motif_DB interpro_ID From To Entry Definition

None - - - - -

Motif_DB	interpro_ID	From	To	Entry	Definition
None	-	-	-	-	-

Prediction of transmembrane (TM) segments

Method No. N terminal transmembrane region C terminal type length

- - - - - - -

Method	No.	N terminal	transmembrane region	C terminal	type	length
-	-	-	-	-	-	-

Expression profile	Description

: RT-PCR-ELISA Description
: Experimental conditions

Primer_f
: GGGAGACCAAAGAGAATGACC

Primer_r
: CGTTACATTTTCTTCTAGGGG

PCR conditions
: 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

RT-PCR-ELISA	Description

RH mapping information	Description

Chromosome No.

: 14

Experimental conditions

Panel name	: GeneBridge 4
Primer_f	: CTGTGATGGCCGATTCCTTCC
Primer_r	: GCAAAATCTATTAGGTCGCTG
PCR product length	: 127 bp
PCR conditions	: 95 °C15 sec64 °C60 sec30 cycles

How to obtain KIAA clone(s) Back to the HUGE Protein Database homepage

	cloned DNA seq.
Warning for N-terminal truncation:	YES
Warning for coding interruption:	NO

Length of 3'UTR	0 bp
Genome contig ID	gi51511730r_94632710
PolyA signal sequence (AAGAAA,-32)	+--------+--------+----*----+---- TAGAAGAAAATGTAACGAAAGAATCAATCAGTAGT
Flanking genome sequence (100000 - 99951)	----+--------+--------+--------+--------+----* AAAAAAAAGGAAAAAAGGAAACATGTGGACCACGTAGAAAGTTCACTATT

	Chr	f/r	start	end	exon	identity	class
ContigView(URL based/DAS)	14	r	94732710	94739870	2	100.0	Perfect prediction

Primer_f	: GGGAGACCAAAGAGAATGACC
Primer_r	: CGTTACATTTTCTTCTAGGGG
PCR conditions	: 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

Gene/Protein Characteristic Table for KIAA1188

Features of the cloned DNA sequence

Features of the protein sequence

Expression profile

RH mapping information