hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-19522325/chunk_1/iprscan-20080501-19522325.nocrc
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Query sequence: KIAA1190
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00096.16.ls Zinc finger, C2H2 type                         113.7    4.8e-31   4
PF00096.16.fs Zinc finger, C2H2 type                         105.8    1.1e-28   4

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00096.16.fs   1/4       3    25 ..     1    24 []    24.6  7.2e-05
PF00096.16.ls   1/4       3    25 ..     1    24 []    26.5  8.6e-05
PF00096.16.ls   2/4      31    53 ..     1    24 []    25.8  0.00015
PF00096.16.fs   2/4      31    53 ..     1    24 []    23.8  0.00011
PF00096.16.fs   3/4      59    81 ..     1    24 []    35.1  1.7e-07
PF00096.16.ls   3/4      59    81 ..     1    24 []    37.1  5.8e-08
PF00096.16.ls   4/4      87   109 ..     1    24 []    24.4  0.00038

Alignments of top-scoring domains:
PF00096.16.fs: domain 1 of 4, from 3 to 25: score 24.6, E = 7.2e-05
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      ++C+  C+++F  k++L++H+ +H   
    KIAA1190     3    FRCE-NCNERFQYKYQLRSHMSIH    25   

PF00096.16.ls: domain 1 of 4, from 3 to 25: score 26.5, E = 8.6e-05
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      ++C+  C+++F  k++L++H+ +H   
    KIAA1190     3    FRCE-NCNERFQYKYQLRSHMSIH    25   

PF00096.16.ls: domain 2 of 4, from 31 to 53: score 25.8, E = 0.00015
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      ++C+  Cgk F+ k  +  H++tH   
    KIAA1190    31    FMCQ-WCGKDFNMKQYFDEHMKTH    53   

PF00096.16.fs: domain 2 of 4, from 31 to 53: score 23.8, E = 0.00011
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      ++C+  Cgk F+ k  +  H++tH   
    KIAA1190    31    FMCQ-WCGKDFNMKQYFDEHMKTH    53   

PF00096.16.fs: domain 3 of 4, from 59 to 81: score 35.1, E = 1.7e-07
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      y C+ +CgksF+++ n+krH+rtH   
    KIAA1190    59    YICE-ICGKSFTSRPNMKRHRRTH    81   

PF00096.16.ls: domain 3 of 4, from 59 to 81: score 37.1, E = 5.8e-08
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      y C+ +CgksF+++ n+krH+rtH   
    KIAA1190    59    YICE-ICGKSFTSRPNMKRHRRTH    81   

PF00096.16.ls: domain 4 of 4, from 87 to 109: score 24.4, E = 0.00038
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      y C+ +Cg++F+ +  Lk+H+ ++   
    KIAA1190    87    YPCD-VCGQRFRFSNMLKAHKEKC    109  

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