# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/fg00739.fasta.huge -Q ../query/KIAA1193.ptfa ./tmplib.24314 2
FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 KIAA1193, 544 aa
 vs ./tmplib.24314 library

1986961 residues in  2037 sequences
  Expectation_n fit: rho(ln(x))= 7.6430+/-0.00672; mu= 3.9620+/- 0.454
 mean_var=226.1006+/-55.074, 0's: 0 Z-trim: 8  B-trim: 137 in 1/39
 Lambda= 0.085295

FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 37, opt: 25, open/ext: -10/-2, width:  16
The best scores are:                                      opt bits E(2037)
KIAA1610  ( 484 res)   fj11544                     ( 484)  983 133.5 3.5e-32
KIAA0458  ( 1552 res)   ef01252                    (1552)  210 39.0  0.0032


>>KIAA1610  ( 484 res)   fj11544                          (484 aa)
 initn: 936 init1: 717 opt: 983  Z-score: 669.7  bits: 133.5 E(): 3.5e-32
Smith-Waterman score: 983;  44.557% identity (67.848% similar) in 395 aa overlap (41-419:3-381)

               20        30        40        50        60        70
KIAA11 PRVVSCLEHSLCPGEPGLQTTAVVSMGSGDHQFNLAEILSQNYSVRGECEEASRCPDKPK
                                     :.:.  . : ..  ..:: . .:.  :  .
KIAA16                             LVHDFDDERTLEEEEMMEGETNFSSEIEDLAR
                                           10        20        30  

               80        90              100       110       120   
KIAA11 EELEKDFISQSNDMPFDELLALYGY-------EASDPISDRESEGGDVAPNLPDMTL---
       :          .:::. :::.::::       : ..   ..: :: :      : .    
KIAA16 E----------GDMPIHELLSLYGYGSTVRLPEEDEEEEEEEEEGEDDEDADNDDNSGCS
                       40        50        60        70        80  

                130       140       150       160       170        
KIAA11 --DKEQIAKDLLSGEEEEETQSSADDLTPSVTSHEASDLFPNRSGSRFLADEDREPGSSA
         .::.  ::  :. .:.::::: :: . ::.:..:....  :  . : .. . :     
KIAA16 GENKEENIKD--SSGQEDETQSSNDDPSQSVASQDAQEIIRPRRCKYFDTNSEVEE----
             90         100       110       120       130          

      180       190       200        210       220       230       
KIAA11 SSDTEEDSLPANKCKKEIMVGPQFQADLS-NLHLNRHCEKIYENEDQLLWDPSVLPEREV
        :. .:: .:..  ::::::: .:::..  ..   .. ::.:::.:::::::  ::: .:
KIAA16 ESEEDEDYIPSEDWKKEIMVGSMFQAEIPVGICRYKENEKVYENDDQLLWDPEYLPEDKV
        140       150       160       170       180       190      

       240       250       260       270       280       290       
KIAA11 EEFLYRAVKRRWHEMAGPQLPEGEAVKDSEQALYELVKCNFNVEEALRRLRFNVKVIRDG
         ::  : .:   : .   .:::  .::.::::::::::::..::::::::::::. :. 
KIAA16 IIFLKDASRRTGDEKGVEAIPEGSHIKDNEQALYELVKCNFDTEEALRRLRFNVKAAREE
        200       210       220       230       240       250      

       300       310       320       330       340       350       
KIAA11 LCAWSEEECRNFEHGFRVHGKNFHLIQANKVRTRSVGECVEYYYLWKKSERYDYFAQQTR
       : .:.::::::::.:....::.:::::::::::::::::: .::.::::::::.::::::
KIAA16 LSVWTEEECRNFEQGLKAYGKDFHLIQANKVRTRSVGECVAFYYMWKKSERYDFFAQQTR
        260       270       280       290       300       310      

       360        370        380        390       400       410    
KIAA11 LGRRKY-VPSGTTD-ADQDLDGSDPDGPGR-PRPEQDTLTGMRTDPLSVDGTAGGLDEPG
       .:..:: .  :.::  :. :: :.  . .: : :   . ..  ..  . :::..  .. :
KIAA16 FGKKKYNLHPGVTDYMDRLLDESESAASSRAPSPPPTASNSSNSQSEKEDGTVSTANQNG
        320       330       340       350       360       370      

          420       430       440       450       460       470    
KIAA11 VASDGLPSSEPGPCSFQQLDESPAVPLSHRPPALADPASYQPAVTAPEPDASPRLAVDFA
       :.:.:                                                       
KIAA16 VSSNGPGEILNKEEVKVEGLHINGPTGGNKKPLHADMDTNGYETDNLTTDPKLAHMTARN
        380       390       400       410       420       430      

>>KIAA0458  ( 1552 res)   ef01252                         (1552 aa)
 initn: 203 init1:  90 opt: 210  Z-score: 149.7  bits: 39.0 E(): 0.0032
Smith-Waterman score: 210;  27.315% identity (55.093% similar) in 216 aa overlap (190-393:266-469)

     160       170       180       190       200       210         
KIAA11 NRSGSRFLADEDREPGSSASSDTEEDSLPANKCKKEIMVGPQFQADLSNLHL--NRHCEK
                                     :. . :: :::. :: : .:.   .   . 
KIAA04 FSDIFAAREFKARVDSFFYILGYNPETRRLNSTQGEIRVGPSHQAKLPDLQPFPSPDGDT
         240       250       260       270       280       290     

       220       230       240       250           260             
KIAA11 IYENEDQLLWDPSVLPEREVEEFLYRAVKRRWHEMAG----PQLPEG--EAVKDSE--QA
       . ..:. :.: :.:    . . ..:  . :    .::     .  .:   : .:.   .:
KIAA04 VTQHEE-LVWMPGV---NDCDLLMYLRAARSMAAFAGMCDGGSTEDGCVAASRDDTTLNA
         300           310       320       330       340       350 

     270       280         290       300       310       320       
KIAA11 LYELVKCNFNVEEALRRL--RFNVKVIRDGLCAWSEEECRNFEHGFRVHGKNFHLIQANK
       :  : . .... .::.::  .   :.:.   : :.:.: . : .:.: .::::  :. . 
KIAA04 LNTLHESGYDAGKALQRLVKKPVPKLIEK--C-WTEDEVKRFVKGLRQYGKNFFRIRKEL
             360       370       380          390       400        

       330       340       350       360       370       380       
KIAA11 VRTRSVGECVEYYYLWKKSERYDYFAQQTRLGRRKYVPSGTTDADQDLDGSDPDGPGRPR
       . .. .:: . .:: :::. .    : ..:  ::.   .          ..  . :.:: 
KIAA04 LPNKETGELITFYYYWKKTPE----AASSRAHRRHRRQAVFRRIKTRTASTPVNTPSRP-
      410       420           430       440       450       460    

       390       400       410       420       430       440       
KIAA11 PEQDTLTGMRTDPLSVDGTAGGLDEPGVASDGLPSSEPGPCSFQQLDESPAVPLSHRPPA
       : .. :                                                      
KIAA04 PSSEFLDLSSASEDDFDSEDSEQELKGYACRHCFTTTSKDWHHGGRENILLCTDCRIHFK
           470       480       490       500       510       520   




544 residues in 1 query   sequences
1986961 residues in 2037 library sequences
 Scomplib [34.26]
 start: Thu Dec 18 15:12:34 2008 done: Thu Dec 18 15:12:34 2008
 Total Scan time:  0.470 Total Display time:  0.030

Function used was FASTA [version 34.26.5 April 26, 2007]