hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-19571011/chunk_1/iprscan-20080501-19571011.nocrc
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Query sequence: KIAA1193
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model           Description                             Score    E-value  N 
--------        -----------                             -----    ------- ---
PF01448.14.fs   ELM2 domain                              36.8    4.5e-10   1
PF00249.21.fs   Myb-like DNA-binding domain              39.3    9.1e-10   1
PF00249.21.ls   Myb-like DNA-binding domain              41.0    3.8e-09   1
PF01448.14.ls   ELM2 domain                              38.5    2.2e-08   1

Parsed for domains:
Model           Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------        ------- ----- -----    ----- -----      -----  -------
PF01448.14.fs     1/1     194   252 ..     1    82 []    36.8  4.5e-10
PF01448.14.ls     1/1     194   252 ..     1    82 []    38.5  2.2e-08
PF00249.21.fs     1/1     298   344 ..     1    65 []    39.3  9.1e-10
PF00249.21.ls     1/1     298   344 ..     1    65 []    41.0  3.8e-09

Alignments of top-scoring domains:
PF01448.14.fs: domain 1 of 1, from 194 to 252: score 36.8, E = 4.5e-10
                   *->geIrVGskyQAdvPefidrqleeterdesedredLTkkedeekldel
                      +eI+VG+++QAd+  +    +   e++++++             d+l
    KIAA1193   194    KEIMVGPQFQADLSNL--HLNRHCEKIYENE-------------DQL 225  

                   vWsPeDsqnqlddekideylrlarskksirtfera<-*
                   +W+P+     l +++++e+l  a +    r  +++   
    KIAA1193   226 LWDPS----VLPEREVEEFLYRAVK----RRWHEM    252  

PF01448.14.ls: domain 1 of 1, from 194 to 252: score 38.5, E = 2.2e-08
                   *->geIrVGskyQAdvPefidrqleeterdesedredLTkkedeekldel
                      +eI+VG+++QAd+  +    +   e++++++             d+l
    KIAA1193   194    KEIMVGPQFQADLSNL--HLNRHCEKIYENE-------------DQL 225  

                   vWsPeDsqnqlddekideylrlarskksirtfera<-*
                   +W+P+     l +++++e+l  a +    r  +++   
    KIAA1193   226 LWDPS----VLPEREVEEFLYRAVK----RRWHEM    252  

PF00249.21.fs: domain 1 of 1, from 298 to 344: score 39.3, E = 9.1e-10
                   *->rgrWtaeEdellveavekhGkgfgIrlsltkanWkkIaeklgpgssn
                         W++eE+  ++++++ hGk+           +++I +        
    KIAA1193   298    LCAWSEEECRNFEHGFRVHGKN-----------FHLIQANK------ 327  

                   nvlgrtaeqcklryykyk<-*
                    v +r++ +c+++yy +k   
    KIAA1193   328 -VRTRSVGECVEYYYLWK    344  

PF00249.21.ls: domain 1 of 1, from 298 to 344: score 41.0, E = 3.8e-09
                   *->rgrWtaeEdellveavekhGkgfgIrlsltkanWkkIaeklgpgssn
                         W++eE+  ++++++ hGk+           +++I +        
    KIAA1193   298    LCAWSEEECRNFEHGFRVHGKN-----------FHLIQANK------ 327  

                   nvlgrtaeqcklryykyk<-*
                    v +r++ +c+++yy +k   
    KIAA1193   328 -VRTRSVGECVEYYYLWK    344  

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