hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-19571011/chunk_1/iprscan-20080501-19571011.nocrc
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Query sequence: KIAA1193
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00717                                                  41.6    1.1e-07   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00717    1/1     297   346 ..     1    53 []    41.6  1.1e-07

Alignments of top-scoring domains:
SM00717: domain 1 of 1, from 297 to 346: score 41.6, E = 1.1e-07
                   *->kkgeWteeEdelLleavkkyGkgtdndWakIakelp.gRtpkqcrer
                          W+eeE + ++++ + +G    +++++I  +  ++R++ +c+e+
    KIAA1193   297    GLCAWSEEECRNFEHGFRVHG----KNFHLIQANKVrTRSVGECVEY 339  

                   wrnllkp<-*
                   ++ ++k+   
    KIAA1193   340 YYLWKKS    346  

//