hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080501/iprscan-20080501-19584648/chunk_1/iprscan-20080501-19584648.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA1194 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF03372.13.ls Endonuclease/Exonuclease/phosphatase fa 131.4 2.4e-36 1 PF03372.13.fs Endonuclease/Exonuclease/phosphatase fa 129.4 2.6e-36 1 PF00560.23.ls Leucine Rich Repeat 50.7 4.5e-12 4 PF00560.23.fs Leucine Rich Repeat 43.7 6.8e-11 4 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00560.23.fs 1/4 70 91 .. 1 24 [] 13.7 0.011 PF00560.23.ls 1/4 70 91 .. 1 24 [] 15.5 0.17 PF00560.23.ls 2/4 93 114 .. 1 24 [] 18.8 0.018 PF00560.23.fs 2/4 93 114 .. 1 24 [] 16.9 0.0014 PF00560.23.ls 3/4 116 137 .. 1 24 [] 14.1 0.46 PF00560.23.fs 3/4 116 137 .. 1 24 [] 12.3 0.026 PF03372.13.fs 1/1 207 556 .. 1 198 [] 129.4 2.6e-36 PF03372.13.ls 1/1 207 556 .. 1 198 [] 131.4 2.4e-36 Alignments of top-scoring domains: PF00560.23.fs: domain 1 of 4, from 70 to 91: score 13.7, E = 0.011 *->nLeeLdLsgCNpsltgslpssl.nl<-* +L+ L+Ls+ N sl+ +ps++ +l KIAA1194 70 HLTALHLSD-N-SLS-RIPSDIaKL 91 PF00560.23.ls: domain 1 of 4, from 70 to 91: score 15.5, E = 0.17 *->nLeeLdLsgCNpsltgslpssl.nl<-* +L+ L+Ls+ N sl+ +ps++ +l KIAA1194 70 HLTALHLSD-N-SLS-RIPSDIaKL 91 PF00560.23.ls: domain 2 of 4, from 93 to 114: score 18.8, E = 0.018 *->nLeeLdLsgCNpsltgslpssl.nl<-* nL +LdLs+ N ++ +slp++l+n+ KIAA1194 93 NLVYLDLSS-N-KI-RSLPAELgNM 114 PF00560.23.fs: domain 2 of 4, from 93 to 114: score 16.9, E = 0.0014 *->nLeeLdLsgCNpsltgslpssl.nl<-* nL +LdLs+ N ++ +slp++l+n+ KIAA1194 93 NLVYLDLSS-N-KI-RSLPAELgNM 114 PF00560.23.ls: domain 3 of 4, from 116 to 137: score 14.1, E = 0.46 *->nLeeLdLsgCNpsltgslpssl.nl<-* +L+eL+L++ N l + lp +l++l KIAA1194 116 SLRELHLNN-N-LL-RVLPFELgKL 137 PF00560.23.fs: domain 3 of 4, from 116 to 137: score 12.3, E = 0.026 *->nLeeLdLsgCNpsltgslpssl.nl<-* +L+eL+L++ N l + lp +l++l KIAA1194 116 SLRELHLNN-N-LL-RVLPFELgKL 137 PF03372.13.fs: domain 1 of 1, from 207 to 556: score 129.4, E = 2.6e-36 *->lkiltwNvnglra.l.s..................llellk.edpDv ++++++Nv++ ++ +++ + +++ +++ +++ +++++ ++++D+ KIAA1194 207 FSVMCYNVLCDKYaTrQlygycpswalnwdyrkkaIIQEILsCNADI 253 icLQEvklsp.s.ll.l.lg.gyv..........ytgfgg.gggkgGvai + LQEv +++ +++ +l++ ++++ +++++ +t+ +++ +G+ai KIAA1194 254 VSLQEVETEQyYsFFlVeLKeRGYngffspksraRTMSEQeRKHVDGCAI 303 lsklplvsvi.gi..................................... ++k ++ +++ ++ + + ++++++ ++ ++++ + + + KIAA1194 304 FFKTEKFTLVqKHtvefnqlamansegseamlnrvmtkdnigvavllelr 353 ......dli.rvilasgt.fvvvntHlpagg.rldeRlaqyaelldflsf +++ + ++++++++ + + v+n+H ++++++ d++l q +++l ++++ KIAA1194 354 kesiemPSGkPHLGTEKQlILVANAHMHWDPeYSDVKLVQTMMFLSEVKN 403 .................ksdpvilcGDfNarpdeids.llk.igkstl.. ++ +++ +++ ++ + p++lc D+N pd+ +++ l+++g++t ++ KIAA1194 404 iidkasrnlkssvlgefGTIPLVLCADLNSLPDSGVVeYLStGGVETNhk 453 ....................................elpitfppTywsyr + ++ + +++ ++ + ++++++++++ +++ + ++ + ++ p+T+++ KIAA1194 454 dfkelrynesltnfschgkngttngrithgfklqsaYESGLMPYTNYTF- 502 gtsekkntgsrlDrilvsg.ll.rv.il.ille..............vlg +++ +D+i++s++ l++++il++l+++ +++ ++ ++++ + KIAA1194 503 ------DFKGIIDYIFYSKpQLnTLgILgPLDHhwlvennisgcphpLIP 546 SDHrPVlatl<-* SDH+ ++a+l KIAA1194 547 SDHFSLFAQL 556 PF03372.13.ls: domain 1 of 1, from 207 to 556: score 131.4, E = 2.4e-36 *->lkiltwNvnglra.l.s..................llellk.edpDv ++++++Nv++ ++ +++ + +++ +++ +++ +++++ ++++D+ KIAA1194 207 FSVMCYNVLCDKYaTrQlygycpswalnwdyrkkaIIQEILsCNADI 253 icLQEvklsp.s.ll.l.lg.gyv..........ytgfgg.gggkgGvai + LQEv +++ +++ +l++ ++++ +++++ +t+ +++ +G+ai KIAA1194 254 VSLQEVETEQyYsFFlVeLKeRGYngffspksraRTMSEQeRKHVDGCAI 303 lsklplvsvi.gi..................................... ++k ++ +++ ++ + + ++++++ ++ ++++ + + + KIAA1194 304 FFKTEKFTLVqKHtvefnqlamansegseamlnrvmtkdnigvavllelr 353 ......dli.rvilasgt.fvvvntHlpagg.rldeRlaqyaelldflsf +++ + ++++++++ + + v+n+H ++++++ d++l q +++l ++++ KIAA1194 354 kesiemPSGkPHLGTEKQlILVANAHMHWDPeYSDVKLVQTMMFLSEVKN 403 .................ksdpvilcGDfNarpdeids.llk.igkstl.. ++ +++ +++ ++ + p++lc D+N pd+ +++ l+++g++t ++ KIAA1194 404 iidkasrnlkssvlgefGTIPLVLCADLNSLPDSGVVeYLStGGVETNhk 453 ....................................elpitfppTywsyr + ++ + +++ ++ + ++++++++++ +++ + ++ + ++ p+T+++ KIAA1194 454 dfkelrynesltnfschgkngttngrithgfklqsaYESGLMPYTNYTF- 502 gtsekkntgsrlDrilvsg.ll.rv.il.ille..............vlg +++ +D+i++s++ l++++il++l+++ +++ ++ ++++ + KIAA1194 503 ------DFKGIIDYIFYSKpQLnTLgILgPLDHhwlvennisgcphpLIP 546 SDHrPVlatl<-* SDH+ ++a+l KIAA1194 547 SDHFSLFAQL 556 //