hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-20114925/chunk_1/iprscan-20080501-20114925.nocrc
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Query sequence: KIAA1202
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF08687.1.ls Apx/Shroom domain ASD2                         545.5   5.1e-161   1
PF08687.1.fs Apx/Shroom domain ASD2                         543.6   1.9e-160   1
PF08688.1.fs Apx/Shroom domain ASD1                          15.1    0.00048   1
PF00595.14.ls PDZ domain (Also known as DHR or GLGF)          19.6     0.0067   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00595.14.ls   1/1      16    93 ..     1    86 []    19.6   0.0067
PF08688.1.fs   1/1     774   786 ..   224   236 .]    15.1  0.00048
PF08687.1.fs   1/1    1204  1495 ..     1   299 []   543.6 1.9e-160
PF08687.1.ls   1/1    1204  1495 ..     1   299 []   545.5 5.1e-161

Alignments of top-scoring domains:
PF00595.14.ls: domain 1 of 1, from 16 to 93: score 19.6, E = 0.0067
                   *->evtlekedkrgglGfsikggsdkgadkgifvsevlpGsgaAeagGrL
                       v+l+   ++ ++Gf++kgg ++   +++ vs++  G  aA  ++  
    KIAA1202    16    PVQLQ---GGAPWGFTLKGGLEHC--EPLTVSKIEDGGKAALSQK-M 56   

                   qaGDqIlsvNGqdlenlsheeavlalkgsggsevtLtvl<-*
                   + GD ++ +NG++l +    ea +++kgs    ++L v+   
    KIAA1202    57 RTGDELVNINGTPLYGS-RQEALILIKGSFR-ILKLIVR    93   

PF08688.1.fs: domain 1 of 1, from 774 to 786: score 15.1, E = 0.00048
                   *->fAdRrkfFEekgK<-*
                      fAdRrkfFEe++K   
    KIAA1202   774    FADRRKFFEESSK    786  

PF08687.1.fs: domain 1 of 1, from 1204 to 1495: score 543.6, E = 1.9e-160
                   *->rElVrkLsPDkSL.adiLapksrpkptmdLvegCLFPqdeklleksy
                      r+   +   ++S +a+++ ++++ + ++++ +g L  q+e+++ ++y
    KIAA1202  1204    RQ---G---SQSVpAEQESFALHSSDFLPPIRGHLGSQPEQAQPPCY 1244 

                   qrrRlLkrdastetleeaksdfqhfePgkpassliqtlsayyslSapkae
                   ++  +L+r+ ++e++e ak++fqhf+P+++a ++++++sayy++S++kae
    KIAA1202  1245 YGIGGLWRTSGQEATESAKQEFQHFSPPSGAPGIPTSYSAYYNISVAKAE 1294 

                   llnklKdqpegqeleeglged.ldndlqeKKvELiesLskKLqvLreeqe
                   llnklKdqpe  ++e glge+++d++l++KK++Lies+s+KL+vLre+q+
    KIAA1202  1295 LLNKLKDQPE--MAEIGLGEEeVDHELAQKKIQLIESISRKLSVLREAQR 1342 

                   sLledisaNtaLGeeveAkVkevCkPnEfeKFrmFigDLdkVvsLLLSLS
                   +Lledi+aN aLGeeveA++k+vCk+nEfeK+++F+gDLdkVv+LLLSLS
    KIAA1202  1343 GLLEDINANSALGEEVEANLKAVCKSNEFEKYHLFVGDLDKVVNLLLSLS 1392 

                   gRLARVEnALnridsdadpdErqsLeeKrqlLqrQhEDAKeLKenlDRRE
                   gRLARVEnALn+ids+a+ +E+ +L+eK+q+L++Q++DAKeLKe++DRRE
    KIAA1202  1393 GRLARVENALNSIDSEAN-QEKLVLIEKKQQLTGQLADAKELKEHVDRRE 1441 

                   rvVagiLaryLpaEqLaDYdhFvkmKaaLiieQReLedKIKLgEEQLkcL
                   ++V+g+++ryLp++qL+DY+hFvkmK+aLiieQReLe+KIKLgEEQLkcL
    KIAA1202  1442 KLVFGMVSRYLPQDQLQDYQHFVKMKSALIIEQRELEEKIKLGEEQLKCL 1491 

                   kdsL<-*
                   ++sL   
    KIAA1202  1492 RESL    1495 

PF08687.1.ls: domain 1 of 1, from 1204 to 1495: score 545.5, E = 5.1e-161
                   *->rElVrkLsPDkSL.adiLapksrpkptmdLvegCLFPqdeklleksy
                      r+   +   ++S +a+++ ++++ + ++++ +g L  q+e+++ ++y
    KIAA1202  1204    RQ---G---SQSVpAEQESFALHSSDFLPPIRGHLGSQPEQAQPPCY 1244 

                   qrrRlLkrdastetleeaksdfqhfePgkpassliqtlsayyslSapkae
                   ++  +L+r+ ++e++e ak++fqhf+P+++a ++++++sayy++S++kae
    KIAA1202  1245 YGIGGLWRTSGQEATESAKQEFQHFSPPSGAPGIPTSYSAYYNISVAKAE 1294 

                   llnklKdqpegqeleeglged.ldndlqeKKvELiesLskKLqvLreeqe
                   llnklKdqpe  ++e glge+++d++l++KK++Lies+s+KL+vLre+q+
    KIAA1202  1295 LLNKLKDQPE--MAEIGLGEEeVDHELAQKKIQLIESISRKLSVLREAQR 1342 

                   sLledisaNtaLGeeveAkVkevCkPnEfeKFrmFigDLdkVvsLLLSLS
                   +Lledi+aN aLGeeveA++k+vCk+nEfeK+++F+gDLdkVv+LLLSLS
    KIAA1202  1343 GLLEDINANSALGEEVEANLKAVCKSNEFEKYHLFVGDLDKVVNLLLSLS 1392 

                   gRLARVEnALnridsdadpdErqsLeeKrqlLqrQhEDAKeLKenlDRRE
                   gRLARVEnALn+ids+a+ +E+ +L+eK+q+L++Q++DAKeLKe++DRRE
    KIAA1202  1393 GRLARVENALNSIDSEAN-QEKLVLIEKKQQLTGQLADAKELKEHVDRRE 1441 

                   rvVagiLaryLpaEqLaDYdhFvkmKaaLiieQReLedKIKLgEEQLkcL
                   ++V+g+++ryLp++qL+DY+hFvkmK+aLiieQReLe+KIKLgEEQLkcL
    KIAA1202  1442 KLVFGMVSRYLPQDQLQDYQHFVKMKSALIIEQRELEEKIKLGEEQLKCL 1491 

                   kdsL<-*
                   ++sL   
    KIAA1202  1492 RESL    1495 

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