# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/fg04512s1.fasta.huge -Q ../query/KIAA1207.ptfa ./tmplib.24314 2
FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 KIAA1207, 2061 aa
 vs ./tmplib.24314 library

1985444 residues in  2037 sequences
  Expectation_n fit: rho(ln(x))= 5.0860+/-0.00562; mu= 19.0413+/- 0.384
 mean_var=108.3050+/-25.517, 0's: 0 Z-trim: 9  B-trim: 0 in 0/40
 Lambda= 0.123240

FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 42, opt: 30, open/ext: -10/-2, width:  16
The best scores are:                                      opt bits E(2037)
KIAA0747  ( 1072 res)   hk04143                    (1072)  181 44.4 0.00019


>>KIAA0747  ( 1072 res)   hk04143                         (1072 aa)
 initn: 284 init1: 100 opt: 181  Z-score: 171.5  bits: 44.4 E(): 0.00019
Smith-Waterman score: 258;  23.232% identity (53.535% similar) in 495 aa overlap (5-489:450-879)

                                         10          20        30  
KIAA12                           MLRVIVESASNIPKTKFG--KPDPIVSVIFKDEK
                                     .: :    :. : :  .:.:.:.. ..:  
KIAA07 LQWNWGVSSRPDPPSAAILVVYLDRAQDLPMVTSELYPPQLKKGNKEPNPMVQLSIQDVT
     420       430       440       450       460       470         

             40        50        60        70        80        90  
KIAA12 KKTKKVDNELNPVWNEILEFDLRGIPLDFSSSLGIIVKDFETIGQNKLIGTATVALKDLT
       ...: : .   :::.: ..: :.  :   :. : . :::    ..   .:. :. :  : 
KIAA07 QESKAVYSTNCPVWEEAFRFFLQD-PQ--SQELDVQVKD---DSRALTLGALTLPLARLL
     480       490       500          510          520       530   

            100       110       120         130       140       150
KIAA12 GDQSRSLPYKLISLLNEKGQDTGATIDLV--IGYDPPSAPHPNDLSGPSVPGMGGDGEED
             :   .   :. .: ..   . ::  : :   :     ..  :.:::  :  . :
KIAA07 TAPELILDQWF--QLSSSGPNSRLYMKLVMRILYLDSS-----EICFPTVPGCPGAWDVD
           540         550       560            570       580      

              160       170       180       190       200       210
KIAA12 EGDEDRLDNAVRGPGPKGPVGTVSEAQLARRLTKVKNSRRMLSNKPQDFQIRVRVIEGRQ
         . .:  ..: .: :. :  :. ..:..     ...  :.   . ::.  . : . :  
KIAA07 SENPQR-GSSVDAP-PR-PCHTTPDSQFG-----TEHVLRIHVLEAQDLIAKDRFL-GGL
        590         600        610            620       630        

              220       230        240       250       260         
KIAA12 LSGNNIRPVVKVHVCGQTHRTRIKRGN-NPFFDELFFYNVNMTPSELMDEIISIRVYNSH
       ..:..  : ::... :.. :... : . :: ..:.:   :. .:.. ..    ..:... 
KIAA07 VKGKS-DPYVKLKLAGRSFRSHVVREDLNPRWNEVFEVIVTSVPGQELE----VEVFDK-
       640        650       660       670       680           690  

     270       280       290       300       310       320         
KIAA12 SLRADCLMGEFKIDVGFVYDEPGHAVMRKWLLLNDPEDTSSGSKGYMKVSMFVLGTGDEP
       .:  : ..:. :. .  : .    . . .:: :   ::. :: . ....  ..      :
KIAA07 DLDKDDFLGRCKVRLTTVLNS---GFLDEWLTL---EDVPSG-RLHLRLERLT------P
             700       710          720           730              

     330       340       350       360         370       380       
KIAA12 PPERRDRDNDSDDVESNLLLPAGIALRWVTFLLKIY--RAEDIPQMDDAFSQTVKEIFGG
        :   . .   . .. : :. .  . . .. ::.::  ::::.:     . . .:..   
KIAA07 RPTAAELE---EVLQVNSLIQTQKSAELAAALLSIYMERAEDLP-----LRKGTKHL---
      740          750       760       770            780          

       390       400       410       420       430       440       
KIAA12 NADKKNLVDPFVEVSFAGKKVCTNIIEKNANPEWNQVVNLQIKFPSVCEKIKLTIYDWDR
               .:.. .. . ..  :. : ... : :.. ... :. : . :...: .    :
KIAA07 --------SPYATLTVGDSSHKTKTISQTSAPVWDESASFLIRKPHT-ESLELQV----R
               790       800       810       820        830        

       450       460       470          480       490       500    
KIAA12 LTKNDVVGTTYLHLSKIAASGGEVED--FS-SSGTGAASYTVNTGETEVGFVPTFGPCYL
          . :.:.  : ::.. ..     :  :. ::: : .   .. :               
KIAA07 GEGTGVLGSLSLPLSELLVADQLCLDRWFTLSSGQGQVLLRAQLGILVSQHSGVEAHSHS
          840       850       860       870       880       890    

          510       520       530       540       550       560    
KIAA12 NLYGSPREYTGFPDPYDELNTGKGEGVAYRGRILVELATFLEKTPPDKKLEPISNDDLLV
                                                                   
KIAA07 YSHSSSSLSEEPELSGGPPHITSSAPELRQRLTHVDSPLEAPAGPLGQVKLTLWYYSEER
          900       910       920       930       940       950    




2061 residues in 1 query   sequences
1985444 residues in 2037 library sequences
 Scomplib [34.26]
 start: Thu Dec 18 15:13:08 2008 done: Thu Dec 18 15:13:09 2008
 Total Scan time:  0.980 Total Display time:  0.060

Function used was FASTA [version 34.26.5 April 26, 2007]