hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20080501/iprscan-20080501-20200494/chunk_1/iprscan-20080501-20200494.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA1207 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00239 282.5 3.1e-80 7 SM00693 172.4 4.4e-47 2 SM00694 99.4 4.2e-25 2 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00239 1/7 1 100 [. 1 92 [] 58.1 1.1e-12 SM00239 2/7 200 299 .. 1 92 [] 51.7 9.8e-11 SM00239 3/7 359 473 .. 1 92 [] 56.1 4.5e-12 SM00693 1/2 856 914 .. 1 73 [] 88.0 1.2e-21 SM00693 2/2 927 983 .. 1 73 [] 84.5 1.3e-20 SM00694 1/2 992 1030 .. 1 42 [] 55.1 8.9e-12 SM00694 2/2 1050 1083 .. 1 42 [] 44.3 1.7e-08 SM00239 4/7 1140 1247 .. 1 92 [] 47.1 2.4e-09 SM00239 5/7 1302 1409 .. 1 92 [] 2.6 39 SM00239 6/7 1554 1653 .. 1 92 [] 49.8 3.6e-10 SM00239 7/7 1789 1919 .. 1 92 [] 17.2 1 Alignments of top-scoring domains: SM00239: domain 1 of 7, from 1 to 100: score 58.1, E = 1.1e-12 *->tLtvkiisArnLp.......DPYVkvs......kTkvvkktlsgfNP L+v + sA n+p+++ +++DP V v ++ ++kTk v + l NP KIAA1207 1 MLRVIVESASNIPktkfgkpDPIVSVIfkdekkKTKKVDNEL---NP 44 vWnEesetFeFevpp......s.LeieVyDk......dfiGrvtippnna vWnE +eF++ + + +s+L i V+D+++ + +++iG++t+ KIAA1207 45 VWNE---ILEFDLRGipldfsSsLGIIVKDFetigqnKLIGTATVA---- 87 hqhsadglihlsell.ggrh.kl<-* l++l + + ++ KIAA1207 88 ----------LKDLTgDQSRsLP 100 SM00239: domain 2 of 7, from 200 to 299: score 51.7, E = 9.8e-11 *->tLtvkiisArnLp....DPYVkvs......kTkvvkktlsgfNPvWn +++v++i++r+L +++ P Vkv+ +++++T++++++ NP+++ KIAA1207 200 QIRVRVIEGRQLSgnniRPVVKVHvcgqthRTRIKRGN----NPFFD 242 EesetFeFevpp.......s.LeieVyDk......dfiGrvtippnnahq E F+++v+ ++++ + + i+Vy++++ + + ++G++ i+ KIAA1207 243 E---LFFYNVNMtpselmdEiISIRVYNShslradCLMGEFKID------ 283 hsadglihlsell.ggrh.kl<-* ++++ + +++ ++k+ KIAA1207 284 -----VGFVYDEPgHAVMrKW 299 SM00239: domain 3 of 7, from 359 to 473: score 56.1, E = 4.5e-12 *->tLtvkiisArnLp........................DPYVkvs... t+ +ki++A+++p ++ + + + +++ ++++ DP+V+vs + KIAA1207 359 TFLLKIYRAEDIPqmddafsqtvkeifggnadkknlvDPFVEVSfag 405 ...kTkvvkktlsgfNPvWnEesetFeFevpp....s.LeieVyDk.... ++ +T++++k+ NP+Wn+ + + + ++ ++++++yD+++ + KIAA1207 406 kkvCTNIIEKNA---NPEWNQ---VVNLQIKFpsvcEkIKLTIYDWdrlt 449 ..dfiGrvtippnnahqhsadglihlsell.ggrh.kl<-* ++d++G++++ ls++ +g+ + KIAA1207 450 knDVVGTTYLH--------------LSKIAaSGGEvED 473 SM00693: domain 1 of 2, from 856 to 914: score 88.0, E = 1.2e-21 *->pirfraevYENQrRwlgvggWkttgLpyDRrdkysDasgnqegtpsg +++++ae+YENQ ++g +W+t+gL++ r+k+sD+ +g KIAA1207 856 TFTVFAEMYENQALMFG--KWGTSGLVG--RHKFSDV--------TG 890 rvelppdelecPspgWeWeddnWsld<-* +++l++++++ P++gWeWe++ W +d KIAA1207 891 KIKLKREFFL-PPKGWEWEGE-WIVD 914 SM00693: domain 2 of 2, from 927 to 983: score 84.5, E = 1.3e-20 *->pirfraevYENQrRwlgvggWkttgLpyDRrdkysDasgnqegtpsg +++f++evY+N+ R++g+ +Wk+ +d+y+Da + g KIAA1207 927 HTEFTDEVYQNESRYPGG-DWKPA------EDTYTDA----N----G 958 rvelppdelecPspgWeWeddnWsld<-* +++ p+el+c +pgWeWedd+Ws+d KIAA1207 959 DKAASPSELTC-PPGWEWEDDAWSYD 983 SM00694: domain 1 of 2, from 992 to 1030: score 55.1, E = 8.9e-12 *->GWqYsdnfvf.RkkpakyhkeekmtdfHHnvRRRrWvRrrrlk<-* GW+Y+++++++ k p++++ ekm+++ +RRRr vR+r+++ KIAA1207 992 GWEYGITIPPdHK-PKSWVAAEKMYHT---HRRRRLVRKRKKD 1030 SM00694: domain 2 of 2, from 1050 to 1083: score 44.3, E = 1.7e-08 *->GWqYsdnfvfRkkpakyhkeekmtdfHHnvRRRrWvRrrrlk<-* GW+Y++ + +k+h++++++d+ +RRRrW+R++ ++ KIAA1207 1050 GWEYASLI-----GWKFHWKQRSSDT---FRRRRWRRKMAPS 1083 SM00239: domain 4 of 7, from 1140 to 1247: score 47.1, E = 2.4e-09 *->tLtvkiisArnLp........DPYVkvs......kTkvvkktlsgfN L++++++ArnL ++++ +DPY+ + ++++ T+++ tl N KIAA1207 1140 HLRCYVYQARNLLaldkdsfsDPYAHICflhrskTTEIIHSTL---N 1183 PvWnEesetFeFevpp............s.LeieVyDk......dfiGrv P+W++ t+ F+ ++ +++++ +++ +++ e++D + ++++f+Gr KIAA1207 1184 PTWDQ---TIIFDEVEiygepqtvlqnpPkVIMELFDNdqvgkdEFLGRS 1230 tippnnahqhsadglihlsell.ggrh.kl<-* +++p + +l ++ ++ KIAA1207 1231 IFSP-------------VVKLNsEMDItPK 1247 SM00239: domain 5 of 7, from 1302 to 1409: score 2.6, E = 39 *->tLtvkiisArnLp...........DPYVkvs......kTkvvkktls +Lt i A +L++ ++ + + P +v+ ++ + + v+k+ + KIAA1207 1302 QLTAIEILAWGLRnmknfqmasitSPSLVVEcggervESVVIKNLKK 1348 gfNPvWnEesetFeFevpp........s.LeieVyDk......dfiGrvt P + ++ F + ++++ +L+i+V D++ +++ ++G++t KIAA1207 1349 --TPNFPS---SVLFMKVFlpkeelymPpLVIKVIDHrqfgrkPVVGQCT 1393 ippnnahqhsadglihlsell.ggrh.kl<-* i + l++ + + +k+ KIAA1207 1394 IER-------------LDRFRcDPYAgKE 1409 SM00239: domain 6 of 7, from 1554 to 1653: score 49.8, E = 3.6e-10 *->tLtvkiisArnLp........DPYVkvs........kTkvvkktlsg t++++i+++ L + ++++ DPY+k++ +++ ++ + +++tl KIAA1207 1554 TVRIYIVRGLELQpqdnnglcDPYIKITlgkkviedRDHYIPNTL-- 1598 fNPvWnEesetFeFevpp...s.LeieVyDk......dfiGrvtippnna NPv++ ++e+++ +++++L+i+VyD+++ ++++ +G+++i+ KIAA1207 1599 -NPVFGR---MYELSCYLpqeKdLKISVYDYdtftrdEKVGETIID---- 1640 hqhsadglihlsell.ggrh.kl<-* l+ + +++ KIAA1207 1641 ----------LENRFlSRFGsHC 1653 SM00239: domain 7 of 7, from 1789 to 1919: score 17.2, E = 1 *->tLtvkiisArnLp............DPYVkvs.........kTkvvk L+v i ++ + + ++ ++ +D YVk + +++ +++kT v+ KIAA1207 1789 YLRVIIWNTKDVIldeksitgeemsDIYVKGWipgneenkqKTDVHY 1835 ktls.gfNPvWnEesetFeFevpp........................s. ++l++ N W F F+ p ++ ++++ + ++++ + + + KIAA1207 1836 RSLDgEGNFNWRF---VFPFDYLPaeqlcivakkehfwsidqtefripPr 1882 LeieVyDk......dfiGrvtippnnahqhsadglihlsell.ggrh.kl L+i+++D ++ + +d +G ++++ ++++ ++k+ KIAA1207 1883 LIIQIWDNdkfsldDYLGFLELDL-------------RHTIIpAKSPeKC 1919 <-* KIAA1207 - - //