hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-20214802/chunk_1/iprscan-20080501-20214802.nocrc
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Query sequence: KIAA1208
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model        Description                                Score    E-value  N 
--------     -----------                                -----    ------- ---
PF06464.2.ls DMAP1-binding Domain                       149.2      1e-41   1
PF06464.2.fs DMAP1-binding Domain                       147.3    3.9e-41   1
PF00066.8.fs Notch (DSL) domain                          42.5      4e-10   2
PF00066.8.ls Notch (DSL) domain                          43.2    8.5e-10   2

Parsed for domains:
Model        Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------     ------- ----- -----    ----- -----      -----  -------
PF00066.8.ls   1/2     127   163 ..     1    42 []    28.3  1.1e-05
PF00066.8.fs   1/2     142   163 ..    21    42 .]    29.5  9.5e-07
PF06464.2.fs   1/1     393   508 ..     1   116 []   147.3  3.9e-41
PF06464.2.ls   1/1     393   508 ..     1   116 []   149.2    1e-41

Alignments of top-scoring domains:
PF00066.8.ls: domain 1 of 2, from 127 to 163: score 28.3, E = 1.1e-05
                   *->sevsrdlCeakykrkC.aerfaNGvCNqeCNnaaCgfDGgDCs<-*
                       +v +  C     ++C+ +  ++G C+ +CNn aC +DGgDCs   
    KIAA1208   127    WPVPN--CA----EGCpGSWIKDGYCDKACNNSACDWDGGDCS    163  

PF00066.8.fs: domain 1 of 2, from 142 to 163: score 29.5, E = 9.5e-07
                   *->aNGvCNqeCNnaaCgfDGgDCs<-*
                      ++G C+ +CNn aC +DGgDCs   
    KIAA1208   142    KDGYCDKACNNSACDWDGGDCS    163  

PF06464.2.fs: domain 1 of 1, from 393 to 508: score 147.3, E = 3.9e-41
                   *->eaasLPaeVreRLaeLdldLsegdiTeKGyeKkKlkLLaeFLpadqr
                      ++++LP++++ +L+ Ldl+L++gdiT KGy+++K++LL++FL+++q+
    KIAA1208   393    NISLLPKDAQLSLNTLDLQLEHGDITLKGYNLSKSALLRSFLMNSQH 439  

                   tkiklqaprtdetkknlevpqnqlsnlesklkseelseevylekVkalLa
                   +kik+qa++tdet+++l++pq+++ +++++++s  +se+ ++ +++a+++
    KIAA1208   440 AKIKNQAIITDETNDSLVAPQEKQVHKSILPNSLGVSERLQRLTFPAVSV 489  

                   kelerengkpmpskersgl<-*
                   k+ ++++g+++p+ +++++   
    KIAA1208   490 KVNGHDQGQNPPLDLETTA    508  

PF06464.2.ls: domain 1 of 1, from 393 to 508: score 149.2, E = 1e-41
                   *->eaasLPaeVreRLaeLdldLsegdiTeKGyeKkKlkLLaeFLpadqr
                      ++++LP++++ +L+ Ldl+L++gdiT KGy+++K++LL++FL+++q+
    KIAA1208   393    NISLLPKDAQLSLNTLDLQLEHGDITLKGYNLSKSALLRSFLMNSQH 439  

                   tkiklqaprtdetkknlevpqnqlsnlesklkseelseevylekVkalLa
                   +kik+qa++tdet+++l++pq+++ +++++++s  +se+ ++ +++a+++
    KIAA1208   440 AKIKNQAIITDETNDSLVAPQEKQVHKSILPNSLGVSERLQRLTFPAVSV 489  

                   kelerengkpmpskersgl<-*
                   k+ ++++g+++p+ +++++   
    KIAA1208   490 KVNGHDQGQNPPLDLETTA    508  

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