# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/fh00041.fasta.huge -Q ../query/KIAA1211.ptfa ./tmplib.24314 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 KIAA1211, 803 aa vs ./tmplib.24314 library 1986702 residues in 2037 sequences Expectation_n fit: rho(ln(x))= 12.8797+/-0.0113; mu= -19.0448+/- 0.764 mean_var=590.8669+/-141.690, 0's: 0 Z-trim: 5 B-trim: 0 in 0/40 Lambda= 0.052763 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 38, opt: 26, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2037) KIAA0170 ( 2090 res) ha02399 (2090) 317 39.6 0.0041 >>KIAA0170 ( 2090 res) ha02399 (2090 aa) initn: 255 init1: 76 opt: 317 Z-score: 147.7 bits: 39.6 E(): 0.0041 Smith-Waterman score: 337; 22.716% identity (46.514% similar) in 832 aa overlap (51-782:896-1699) 30 40 50 60 70 80 KIAA12 RWRRLGRAGGARRRRIWGKRRRRADRPGPEEKREEGDTEPLLKQEGPVEAAQPPVERKEA : :: . . . :: : .: . ::: : KIAA01 LARDTQRQESDKNGESASPERDRESLKVEIETSEEIQEKQVQKQTLPSKAFEREVERPVA 870 880 890 900 910 920 90 100 110 120 130 KIAA12 AALEQGRKVEELRWQEVDERQTM-PRPYTFQVSSGGKQILFPKVNLSPVTPAKDTGLTAA . ..:: . . ::.:. .: ::.: : . : :: .: KIAA01 NRECDPAELEEKVPKVILERDTQRGEP------EGGSQD--QKGQASSPTPEPGVGAGDL 930 940 950 960 970 140 150 160 170 180 190 KIAA12 PQEPKAPKASPVQHALPSSLSVPHTAILVTGAQLCG--PAVNLSQIKDTACKSLLGLEEK : .:: : : . .: :. : : :: . :.:. .: : : .:. KIAA01 PGPTSAPVPSGSQSGGRGSPVSPRRHQ--KGLLNCKMPPAEKASRIR-AAEKVSRGDQES 980 990 1000 1010 1020 1030 200 210 220 230 240 250 KIAA12 KHA----EAPAGENPPRGPGDARAGSGKAKPPQESPSSASALAEWASIRSRILKNAESDP : .: . ::. : .... . : :: :: : . :. ..: : KIAA01 PDACLPPAVPEAPAPPQKPLNSQSQKHLAPPPLLSPLLPSIKPTVRKTRQDGSQEAPEAP 1040 1050 1060 1070 1080 1090 260 270 280 290 300 310 KIAA12 RSSERDQLRPGDESTPRGRCDSRGNQRKTP-PV-NAKFSIMPAWQKFSDGGTETSKQSTE ::: . ..: :. : .: ..: :: :. .: :. . . . ..:.:. KIAA01 LSSELEPFHP----KPKIR--TRKSSRMTPFPATSAAPEPHPSTSTAQPVTPKPTSQATR 1100 1110 1120 1130 1140 320 330 340 350 360 KIAA12 AESIR---KRPMLGPSEETAPQPPPAGVRELGKGPEKSEMHREPADTTEGCKFAKDL--P ... : : : : :::. :. . : :: ...:.: : ... : KIAA01 SRTNRSSVKTPE--PVVPTAPELQPSTSTD---QPVTSE---PTSQVTRGRKSRSSVKTP 1150 1160 1170 1180 1190 1200 370 380 390 400 410 KIAA12 SFLVPS-LPYPP-----QKVVAHTEFTTSSDSETANGIAKPDPVMPGGEE---------- .::. : : . :... .. .. ... :.::.: . : KIAA01 ETVVPTALELQPSTSTDRPVTSEPTSQATRGRKNRSSVKTPEPVVPTAPELQPSTSTDQP 1210 1220 1230 1240 1250 1260 420 430 440 450 460 KIAA12 -KASPFGIKLR-RTNYSLRFNCDQQAEQKKKKRHSSTGDSADAGPPAAGSARGEKEMEGV . : : : : : . . . . : :.. : . :.. ..:.. .: .: KIAA01 VTSEPTYQATRGRKNRSSVKTPEPVVPTAPELRPSTSTDRPVTPKPTSRTTRSRTNMSSV 1270 1280 1290 1300 1310 1320 470 480 490 500 510 KIAA12 ALKHG--PSLPQER----KQAPSTRRDSAEPSSSRS-----------VPVAHPGPPPASS . :. :. . . : : . ... . ::. ::.: :: .:. KIAA01 KTPETVVPTAPELQISTSTDQPVTPKPTSRTTRSRTNMSSVKNPESTVPIAPELPPSTST 1330 1340 1350 1360 1370 1380 520 530 540 550 560 KIAA12 QTPA-PE---------HDKAANKMPLAQKPALAPKPTSQTPPASPLSKLSRPYLVELLSR . :. :: ......: : . :. ::: .: .:.. .. . KIAA01 EQPVTPEPTSRATRGRKNRSSGKTPETLVPT-APKLEPSTSTDQPVTPEPTSQATRGRTN 1390 1400 1410 1420 1430 570 580 590 600 610 KIAA12 RAGRPDPE---PSEPSKEDQESSDRRPPSP-PGPEERKGQK-RDEEEEATERKPASPPLP :.. :: :. : . . :.:. : .: : . .:. :. . :..: : KIAA01 RSSVKTPETVVPTAPELQPSTSTDQ-PVTPEPTSQATRGRTDRSSVKTPETVVPTAPELQ 1440 1450 1460 1470 1480 1490 620 630 640 650 660 KIAA12 A---TQQE---KPSQTPEAGRKEKPMLQSRHSL--DGSKLTEKVETAQPLWITLALQKQK : :.: .:.. :::.. ... ... . .: . : .:. . . . KIAA01 ASASTDQPVTSEPTSRTTRGRKNRSSVKTPETVVPAAPELQPPTSTDRPVTPEPTSRATR 1500 1510 1520 1530 1540 1550 670 680 690 700 710 720 KIAA12 GFREQQATREERKQAREAKQAEKLSKENVSVSVQPGSSSVSRAGSLHKSTALPE------ : ...... .. . : . . ...: :. .: .: ..: . ..:. :: KIAA01 GRTNRSSVKTPESIVPIAPELQPSTSRNQLVTPEP-TSRATRCRTNRSSVKTPEPVVPTA 1560 1570 1580 1590 1600 1610 730 740 750 760 KIAA12 -EKRPETAV---------SRLERREQLKKANTLPTSVTVEISDSAPPAPLVKEVTK---- : .: :.. :: ::. ... : : :: : .: . :: KIAA01 PEPHPTTSTDQPVTPKLTSRATRRKTNRSSVKTPKPVEPAASDLEPFTPTDQSVTPEAIA 1620 1630 1640 1650 1660 1670 770 780 790 800 KIAA12 --------RFSTPDAAPVSTEPAWLALAKRKAKAWSDCPQIIK : :: : :: : : KIAA01 QGGQSKTLRSSTVRAMPVPTTPEFQSPVTTDQPISPEPITQPSCIKRQRAAGNPGSLAAP 1680 1690 1700 1710 1720 1730 803 residues in 1 query sequences 1986702 residues in 2037 library sequences Scomplib [34.26] start: Thu Dec 18 15:13:17 2008 done: Thu Dec 18 15:13:18 2008 Total Scan time: 0.620 Total Display time: 0.050 Function used was FASTA [version 34.26.5 April 26, 2007]