hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-20465578/chunk_1/iprscan-20080501-20465578.nocrc
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Query sequence: KIAA1222
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF07647.7.fs SAM domain (Sterile alpha motif)                71.6    2.4e-20   1
PF07647.7.ls SAM domain (Sterile alpha motif)                73.5      6e-19   1
PF00536.20.fs SAM domain (Sterile alpha motif)                55.0    1.4e-15   1
PF00595.14.fs PDZ domain (Also known as DHR or GLGF)          57.5    1.7e-15   1
PF00595.14.ls PDZ domain (Also known as DHR or GLGF)          59.5      1e-14   1
PF00536.20.ls SAM domain (Sterile alpha motif)                57.0    5.7e-14   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00595.14.fs   1/1     148   233 ..     1    86 []    57.5  1.7e-15
PF00595.14.ls   1/1     148   233 ..     1    86 []    59.5    1e-14
PF07647.7.fs   1/1     629   695 ..     1    72 []    71.6  2.4e-20
PF07647.7.ls   1/1     629   695 ..     1    72 []    73.5    6e-19
PF00536.20.fs   1/1     630   693 ..     1    65 []    55.0  1.4e-15
PF00536.20.ls   1/1     630   693 ..     1    65 []    57.0  5.7e-14

Alignments of top-scoring domains:
PF00595.14.fs: domain 1 of 1, from 148 to 233: score 57.5, E = 1.7e-15
                   *->evtlekedkrgglGfsikggsdkga....dkgifvsevlpGsgaAea
                       v lek     glG+si g++ +   + ++ gifv+ v +G gaA++
    KIAA1222   148    PVELEK--DEDGLGISIIGMGVGADagleKLGIFVKTVTEG-GAAQR 191  

                   gGrLqaGDqIlsvNGqdlenlsheeavlalkgsggsevtLtvl<-*
                   +Gr+q++DqI++v+G +l+++++ +a+ +l++++g  v+ ++    
    KIAA1222   192 DGRIQVNDQIVEVDGISLVGVTQNFAATVLRNTKG-NVRFVIG    233  

PF00595.14.ls: domain 1 of 1, from 148 to 233: score 59.5, E = 1e-14
                   *->evtlekedkrgglGfsikggsdkga....dkgifvsevlpGsgaAea
                       v lek     glG+si g++ +   + ++ gifv+ v +G gaA++
    KIAA1222   148    PVELEK--DEDGLGISIIGMGVGADagleKLGIFVKTVTEG-GAAQR 191  

                   gGrLqaGDqIlsvNGqdlenlsheeavlalkgsggsevtLtvl<-*
                   +Gr+q++DqI++v+G +l+++++ +a+ +l++++g  v+ ++    
    KIAA1222   192 DGRIQVNDQIVEVDGISLVGVTQNFAATVLRNTKG-NVRFVIG    233  

PF07647.7.fs: domain 1 of 1, from 629 to 695: score 71.6, E = 2.4e-20
                   *->veswslesvaeWLesiglegqYkdnFsdqgitglellllrlteedLa
                      v  ws+++v++WL s++l +qY+  Fs+q+itg e+l l+l+ ++L 
    KIAA1222   629    VQEWSVQQVSHWLMSLNL-EQYVSEFSAQNITG-EQL-LQLDGNKL- 671  

                   klalGitsvghRkkilkkiqelkqq<-*
                   k alG+t+ ++R  + kk++e+k +   
    KIAA1222   672 K-ALGMTASQDRAVVKKKLKEMKMS    695  

PF07647.7.ls: domain 1 of 1, from 629 to 695: score 73.5, E = 6e-19
                   *->veswslesvaeWLesiglegqYkdnFsdqgitglellllrlteedLa
                      v  ws+++v++WL s++l +qY+  Fs+q+itg e+l l+l+ ++L 
    KIAA1222   629    VQEWSVQQVSHWLMSLNL-EQYVSEFSAQNITG-EQL-LQLDGNKL- 671  

                   klalGitsvghRkkilkkiqelkqq<-*
                   k alG+t+ ++R  + kk++e+k +   
    KIAA1222   672 K-ALGMTASQDRAVVKKKLKEMKMS    695  

PF00536.20.fs: domain 1 of 1, from 630 to 693: score 55.0, E = 1.4e-15
                   *->dgwsfesVgeWLesiglgqYidnFlsagyidgdtllqlteeDLedlG
                      ++ws+++V+ WL s+ l+qY+++F sa+ i+g++llql+ + L++lG
    KIAA1222   630    QEWSVQQVSHWLMSLNLEQYVSEF-SAQNITGEQLLQLDGNKLKALG 675  

                   vtllGHrkKIlssIqgLk<-*
                   +t   +r    + ++ +k   
    KIAA1222   676 MTASQDRAVVKKKLKEMK    693  

PF00536.20.ls: domain 1 of 1, from 630 to 693: score 57.0, E = 5.7e-14
                   *->dgwsfesVgeWLesiglgqYidnFlsagyidgdtllqlteeDLedlG
                      ++ws+++V+ WL s+ l+qY+++F sa+ i+g++llql+ + L++lG
    KIAA1222   630    QEWSVQQVSHWLMSLNLEQYVSEF-SAQNITGEQLLQLDGNKLKALG 675  

                   vtllGHrkKIlssIqgLk<-*
                   +t   +r    + ++ +k   
    KIAA1222   676 MTASQDRAVVKKKLKEMK    693  

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