hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-20565821/chunk_1/iprscan-20080501-20565821.nocrc
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Query sequence: KIAA1228
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00168.20.ls C2 domain                                      246.9    3.8e-71   3
PF00168.20.fs C2 domain                                      241.1      4e-71   3

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00168.20.fs   1/3     309   395 ..     1    88 []    92.2  7.4e-27
PF00168.20.ls   1/3     309   395 ..     1    88 []    94.1  3.8e-25
PF00168.20.fs   2/3     460   539 ..     1    88 []    55.8    5e-16
PF00168.20.ls   2/3     460   539 ..     1    88 []    57.7  3.6e-14
PF00168.20.fs   3/3     725   814 ..     1    88 []    93.2  3.8e-27
PF00168.20.ls   3/3     725   814 ..     1    88 []    95.1  1.9e-25

Alignments of top-scoring domains:
PF00168.20.fs: domain 1 of 3, from 309 to 395: score 92.2, E = 7.4e-27
                   *->LrVtvieAknLppkDk.....kngksDPYVkvylggdkkdqkkkTkv
                      Lr++ ieA++L  kD+  ++ ++gksDPY  +++g+    q ++++v
    KIAA1228   309    LRIHFIEAQDLQGKDTylkglVKGKSDPYGIIRVGN----QIFQSRV 351  

                   ikktlNPvWNEtFtFevpppdlqetLeieVyDydrfgrddflGevs<-*
                   ik +l+P+WNE+++  v ++++qe Leie++D+d ++ ddflG      
    KIAA1228   352 IKENLSPKWNEVYEALVYEHPGQE-LEIELFDEDPDK-DDFLGSLM    395  

PF00168.20.ls: domain 1 of 3, from 309 to 395: score 94.1, E = 3.8e-25
                   *->LrVtvieAknLppkDk.....kngksDPYVkvylggdkkdqkkkTkv
                      Lr++ ieA++L  kD+  ++ ++gksDPY  +++g+    q ++++v
    KIAA1228   309    LRIHFIEAQDLQGKDTylkglVKGKSDPYGIIRVGN----QIFQSRV 351  

                   ikktlNPvWNEtFtFevpppdlqetLeieVyDydrfgrddflGevs<-*
                   ik +l+P+WNE+++  v ++++qe Leie++D+d ++ ddflG      
    KIAA1228   352 IKENLSPKWNEVYEALVYEHPGQE-LEIELFDEDPDK-DDFLGSLM    395  

PF00168.20.fs: domain 2 of 3, from 460 to 539: score 55.8, E = 5e-16
                   *->LrVtvieAknLppkDkkngksDPYVkvylggdkkdqkkkTkvikktl
                      L +++ +A+nLp   k+++ ++P V +++g     + + +k+  kt 
    KIAA1228   460    LILYLDSARNLPSGKKISSNPNPVVQMSVGH----KAQESKIRYKTN 502  

                   NPvWNEtFtFevpppdlqetLeieVyDydrfgrddflGevs<-*
                    PvW+E FtF ++ p+ q+ Le+eV D+        lG  +   
    KIAA1228   503 EPVWEENFTFFIHNPKRQD-LEVEVRDEQHQC---SLGNLK    539  

PF00168.20.ls: domain 2 of 3, from 460 to 539: score 57.7, E = 3.6e-14
                   *->LrVtvieAknLppkDkkngksDPYVkvylggdkkdqkkkTkvikktl
                      L +++ +A+nLp   k+++ ++P V +++g     + + +k+  kt 
    KIAA1228   460    LILYLDSARNLPSGKKISSNPNPVVQMSVGH----KAQESKIRYKTN 502  

                   NPvWNEtFtFevpppdlqetLeieVyDydrfgrddflGevs<-*
                    PvW+E FtF ++ p+ q+ Le+eV D+        lG  +   
    KIAA1228   503 EPVWEENFTFFIHNPKRQD-LEVEVRDEQHQC---SLGNLK    539  

PF00168.20.fs: domain 3 of 3, from 725 to 814: score 93.2, E = 3.8e-27
                   *->LrVtvieAknLppkDkkng.ksDPYVkvylggdkkd.qkkkTkvikk
                      L V v+ ++nL++   ++ + sDPYV++yl++dk+++ ++kT+v kk
    KIAA1228   725    LIVVVHACRNLIA---FSEdGSDPYVRMYLLPDKRRsGRRKTHVSKK 768  

                   tlNPvWNEtFtFevpppdlqe.tLeieVyDydrfgr..ddflGevs<-*
                   tlNPv++++F+F+v++p++q++tL + V++++ f +++  +lG+v    
    KIAA1228   769 TLNPVFDQSFDFSVSLPEVQRrTLDVAVKNSGGFLSkdKGLLGKVL    814  

PF00168.20.ls: domain 3 of 3, from 725 to 814: score 95.1, E = 1.9e-25
                   *->LrVtvieAknLppkDkkng.ksDPYVkvylggdkkd.qkkkTkvikk
                      L V v+ ++nL++   ++ + sDPYV++yl++dk+++ ++kT+v kk
    KIAA1228   725    LIVVVHACRNLIA---FSEdGSDPYVRMYLLPDKRRsGRRKTHVSKK 768  

                   tlNPvWNEtFtFevpppdlqe.tLeieVyDydrfgr..ddflGevs<-*
                   tlNPv++++F+F+v++p++q++tL + V++++ f +++  +lG+v    
    KIAA1228   769 TLNPVFDQSFDFSVSLPEVQRrTLDVAVKNSGGFLSkdKGLLGKVL    814  

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