hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-21015312/chunk_1/iprscan-20080501-21015312.nocrc
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Query sequence: KIAA1231
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00096.16.ls Zinc finger, C2H2 type                         236.6      5e-68  10
PF00096.16.fs Zinc finger, C2H2 type                         216.9    4.2e-62  10

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00096.16.ls   1/10    269   291 ..     1    24 []    24.5  0.00035
PF00096.16.fs   1/10    269   291 ..     1    24 []    22.5  0.00023
PF00096.16.fs   2/10    444   466 ..     1    24 []    25.8  3.5e-05
PF00096.16.ls   2/10    444   466 ..     1    24 []    27.8  3.6e-05
PF00096.16.ls   3/10    474   496 ..     1    24 []    25.4  0.00019
PF00096.16.fs   3/10    474   496 ..     1    24 []    23.4  0.00014
PF00096.16.ls   4/10    502   524 ..     1    24 []    18.7    0.019
PF00096.16.ls   5/10    530   553 ..     1    24 []    23.3  0.00082
PF00096.16.fs   6/10    558   580 ..     1    24 []    30.4  2.5e-06
PF00096.16.ls   6/10    558   580 ..     1    24 []    32.4  1.5e-06
PF00096.16.fs   7/10    586   609 ..     1    24 []    25.6    4e-05
PF00096.16.ls   7/10    586   609 ..     1    24 []    27.5  4.2e-05
PF00096.16.ls   9/10    686   709 ..     1    24 []    23.5  0.00069

Alignments of top-scoring domains:
PF00096.16.ls: domain 1 of 10, from 269 to 291: score 24.5, E = 0.00035
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                        C  +C+++F ++++L++Hl++H   
    KIAA1231   269    WPCY-ECNRRFISSEQLQQHLNSH    291  

PF00096.16.fs: domain 1 of 10, from 269 to 291: score 22.5, E = 0.00023
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                        C  +C+++F ++++L++Hl++H   
    KIAA1231   269    WPCY-ECNRRFISSEQLQQHLNSH    291  

PF00096.16.fs: domain 2 of 10, from 444 to 466: score 25.8, E = 3.5e-05
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      +kC  +Cgk+F+ k+ L +Hlr H   
    KIAA1231   444    FKCL-QCGKAFREKDKLDQHLRFH    466  

PF00096.16.ls: domain 2 of 10, from 444 to 466: score 27.8, E = 3.6e-05
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      +kC  +Cgk+F+ k+ L +Hlr H   
    KIAA1231   444    FKCL-QCGKAFREKDKLDQHLRFH    466  

PF00096.16.ls: domain 3 of 10, from 474 to 496: score 25.4, E = 0.00019
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                       +C+  C+k F ++ +L++H++ H   
    KIAA1231   474    LTCD-LCNKGFISSTSLESHMKLH    496  

PF00096.16.fs: domain 3 of 10, from 474 to 496: score 23.4, E = 0.00014
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                       +C+  C+k F ++ +L++H++ H   
    KIAA1231   474    LTCD-LCNKGFISSTSLESHMKLH    496  

PF00096.16.ls: domain 4 of 10, from 502 to 524: score 18.7, E = 0.019
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      y+C   C +sF r + Lk H  +H   
    KIAA1231   502    YSCI-FCPESFDRLDLLKDHVAIH    524  

PF00096.16.ls: domain 5 of 10, from 530 to 553: score 23.3, E = 0.00082
                   *->ykCpfdCgksFsrksnLkrHlrt.H<-*
                      ++Cp  C+k+F +  + k+H r+ H   
    KIAA1231   530    FTCP-TCKKRFPDFIQVKKHVRSfH    553  

PF00096.16.fs: domain 6 of 10, from 558 to 580: score 30.4, E = 2.5e-06
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      y+C+ +C+k+F+r++ L+ H+ +H   
    KIAA1231   558    YQCT-ECDKAFCRPDKLRLHMLRH    580  

PF00096.16.ls: domain 6 of 10, from 558 to 580: score 32.4, E = 1.5e-06
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      y+C+ +C+k+F+r++ L+ H+ +H   
    KIAA1231   558    YQCT-ECDKAFCRPDKLRLHMLRH    580  

PF00096.16.fs: domain 7 of 10, from 586 to 609: score 25.6, E = 4e-05
                   *->ykCpfdCgksFsrksnLkrHlrt.H<-*
                      + C+  Cgk F+rk+ L+ H+++ H   
    KIAA1231   586    FLCS-TCGKQFKRKDKLREHMQRmH    609  

PF00096.16.ls: domain 7 of 10, from 586 to 609: score 27.5, E = 4.2e-05
                   *->ykCpfdCgksFsrksnLkrHlrt.H<-*
                      + C+  Cgk F+rk+ L+ H+++ H   
    KIAA1231   586    FLCS-TCGKQFKRKDKLREHMQRmH    609  

PF00096.16.ls: domain 9 of 10, from 686 to 709: score 23.5, E = 0.00069
                   *->ykCpfdCgksFsrksnLkrHlrt.H<-*
                      y C+ +C+k++++ s  k+H+ ++H   
    KIAA1231   686    YFCQ-YCDKVYKSASKRKAHILKnH    709  

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