hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-21015312/chunk_1/iprscan-20080501-21015312.nocrc
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Query sequence: KIAA1231
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model      Description                                  Score    E-value  N 
--------   -----------                                  -----    ------- ---
SM00355                                                 246.5    2.1e-69  10

Parsed for domains:
Model      Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------   ------- ----- -----    ----- -----      -----  -------
SM00355      1/10    269   291 ..     1    23 []    22.4    0.064
SM00355      2/10    444   466 ..     1    23 []    25.2   0.0093
SM00355      3/10    474   496 ..     1    23 []    27.3   0.0021
SM00355      4/10    502   524 ..     1    23 []    22.9    0.045
SM00355      5/10    530   553 ..     1    23 []    25.1   0.0099
SM00355      6/10    558   580 ..     1    23 []    29.8  0.00037
SM00355      7/10    586   609 ..     1    23 []    29.6  0.00044
SM00355      8/10    641   664 ..     1    23 []    21.8    0.095
SM00355      9/10    686   709 ..     1    23 []    21.3     0.14
SM00355     10/10    748   771 ..     1    23 []    21.2     0.15

Alignments of top-scoring domains:
SM00355: domain 1 of 10, from 269 to 291: score 22.4, E = 0.064
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      + C + C+++f s ++L++H+ +H   
    KIAA1231   269    WPCYE-CNRRFISSeQLQQHLNSH    291  

SM00355: domain 2 of 10, from 444 to 466: score 25.2, E = 0.0093
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      +kC + Cgk f+ k+ L +H+r H   
    KIAA1231   444    FKCLQ-CGKAFREKdKLDQHLRFH    466  

SM00355: domain 3 of 10, from 474 to 496: score 27.3, E = 0.0021
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      ++C++ C+k f s ++L+ Hm+ H   
    KIAA1231   474    LTCDL-CNKGFISStSLESHMKLH    496  

SM00355: domain 4 of 10, from 502 to 524: score 22.9, E = 0.045
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y C + C++sf + + Lk H+ +H   
    KIAA1231   502    YSCIF-CPESFDRLdLLKDHVAIH    524  

SM00355: domain 5 of 10, from 530 to 553: score 25.1, E = 0.0099
                   *->ykCpigCgksfssk.aLkrHmr.vH<-*
                      ++Cp  C+k+f++  + k+H+r+ H   
    KIAA1231   530    FTCPT-CKKRFPDFiQVKKHVRsFH    553  

SM00355: domain 6 of 10, from 558 to 580: score 29.8, E = 0.00037
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y+C++ C+k f++++ L+ Hm +H   
    KIAA1231   558    YQCTE-CDKAFCRPdKLRLHMLRH    580  

SM00355: domain 7 of 10, from 586 to 609: score 29.6, E = 0.00044
                   *->ykCpigCgksfssk.aLkrHmr.vH<-*
                      + C+  Cgk+f++k+ L++Hm+++H   
    KIAA1231   586    FLCST-CGKQFKRKdKLREHMQrMH    609  

SM00355: domain 8 of 10, from 641 to 664: score 21.8, E = 0.095
                   *->ykCpigCgksfssk.aLkrHmr.vH<-*
                      +kC + C + f++++ L++H+ ++H   
    KIAA1231   641    FKCRL-CMMGFRRRgMLVNHLSkRH    664  

SM00355: domain 9 of 10, from 686 to 709: score 21.3, E = 0.14
                   *->ykCpigCgksfssk.aLkrHmr.vH<-*
                      y C++ C+k+++s++  k H+ + H   
    KIAA1231   686    YFCQY-CDKVYKSAsKRKAHILkNH    709  

SM00355: domain 10 of 10, from 748 to 771: score 21.2, E = 0.15
                   *->ykCpigCgksfssk.aLkrHmr.vH<-*
                        Cp+ C+k++ssk+ +++H+r++H   
    KIAA1231   748    VCCPH-CSKQYSSKtKMVQHIRkKH    771  

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