hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-21084256/chunk_1/iprscan-20080501-21084256.nocrc
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Query sequence: KIAA1235
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF01388.11.ls ARID/BRIGHT DNA binding domain                 158.7    1.4e-44   1
PF01388.11.fs ARID/BRIGHT DNA binding domain                 156.9      5e-44   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF01388.11.fs   1/1     299   404 ..     1   116 []   156.9    5e-44
PF01388.11.ls   1/1     299   404 ..     1   116 []   158.7  1.4e-44

Alignments of top-scoring domains:
PF01388.11.fs: domain 1 of 1, from 299 to 404: score 156.9, E = 5e-44
                   *->eaqtrerkeFldrLikFmekrgtpltkiPvvgkkeLDLYrLyrlVke
                      + +++erk ++dr++ Fme+rg+p+ ++P+vgkk+LDL+rLy++Vke
    KIAA1235   299    LGNEPERKLWVDRYLTFMEERGSPVSSLPAVGKKPLDLFRLYVCVKE 345  

                   kGGfqqVtkdkkWseiareLgipdsisRGVPSsagslLrshYmryLypfE
                   +GG+ qV+k+kkW+e+a++L++++s      Ssa+s+L+++Y++yL +fE
    KIAA1235   346 IGGLAQVNKNKKWRELATNLNVGTS------SSAASSLKKQYIQYLFAFE 389  

                   cyeeeenlrdeteaaddme<-*
                   c++e    r+e ++++ ++   
    KIAA1235   390 CKIE----RGEEPPPEVFS    404  

PF01388.11.ls: domain 1 of 1, from 299 to 404: score 158.7, E = 1.4e-44
                   *->eaqtrerkeFldrLikFmekrgtpltkiPvvgkkeLDLYrLyrlVke
                      + +++erk ++dr++ Fme+rg+p+ ++P+vgkk+LDL+rLy++Vke
    KIAA1235   299    LGNEPERKLWVDRYLTFMEERGSPVSSLPAVGKKPLDLFRLYVCVKE 345  

                   kGGfqqVtkdkkWseiareLgipdsisRGVPSsagslLrshYmryLypfE
                   +GG+ qV+k+kkW+e+a++L++++s      Ssa+s+L+++Y++yL +fE
    KIAA1235   346 IGGLAQVNKNKKWRELATNLNVGTS------SSAASSLKKQYIQYLFAFE 389  

                   cyeeeenlrdeteaaddme<-*
                   c++e    r+e ++++ ++   
    KIAA1235   390 CKIE----RGEEPPPEVFS    404  

//