hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-21084256/chunk_1/iprscan-20080501-21084256.nocrc
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Query sequence: KIAA1235
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00501                                                 153.8    1.8e-41   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00501    1/1     303   394 ..     1    95 []   153.8  1.8e-41

Alignments of top-scoring domains:
SM00501: domain 1 of 1, from 303 to 394: score 153.8, E = 1.8e-41
                   *->rerelFldrLykFmeergtpilkiPviggkpklDLyrLyrlVkerGG
                      +er+l+ dr+  Fmeerg+p+ ++P++g+kp lDL+rLy++Vke GG
    KIAA1235   303    PERKLWVDRYLTFMEERGSPVSSLPAVGKKP-LDLFRLYVCVKEIGG 348  

                   ydaVtkdkkWkeiaeelgipdtistsasssLrkhYlryLlpfEeflrg<-
                   +++V+k+kkW+e+a+ l+ ++  s+sa+ssL+k+Y++yL++fE+ +++  
    KIAA1235   349 LAQVNKNKKWRELATNLNVGT--SSSAASSLKKQYIQYLFAFECKIER   394  

                   *
                    
    KIAA1235     -   -    

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