hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-21120864/chunk_1/iprscan-20080501-21120864.nocrc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query sequence: KIAA1237
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00008.17.fs EGF-like domain                                 71.0      5e-19   3
PF00008.17.ls EGF-like domain                                 71.1    3.2e-18   3
PF07645.6.fs Calcium binding EGF domain                      60.8    1.1e-17   3
PF07645.6.ls Calcium binding EGF domain                      47.9    3.2e-11   1
PF07974.3.ls EGF-like domain                                 21.8     0.0023   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00008.17.fs   1/3     876   909 ..     1    38 []    37.7  1.2e-09
PF00008.17.ls   1/3     876   909 ..     1    38 []    39.5  1.1e-08
PF07974.3.ls   1/1     876   909 ..     1    37 []    21.8   0.0023
PF07645.6.ls   1/1     912   949 ..     1    55 []    47.9  3.2e-11
PF07645.6.fs   2/3     912   949 ..     1    55 []    46.2  2.8e-13
PF00008.17.fs   2/3     916   945 ..     1    32 [.    24.9  4.5e-06
PF00008.17.ls   2/3     916   949 ..     1    38 []    24.1  0.00047

Alignments of top-scoring domains:
PF00008.17.fs: domain 1 of 3, from 876 to 909: score 37.7, E = 1.2e-09
                   *->CspnngpCsngGtCvdtp..ggytCeCppGyfllytGkrC<-*
                      C+ n  pC+++G+Cv   ++ gy+C+Cpp     ++G++C   
    KIAA1237   876    CAVN--PCLHNGECVADNtsRGYHCRCPPS----WQGDDC    909  

PF00008.17.ls: domain 1 of 3, from 876 to 909: score 39.5, E = 1.1e-08
                   *->CspnngpCsngGtCvdtp..ggytCeCppGyfllytGkrC<-*
                      C+ n  pC+++G+Cv   ++ gy+C+Cpp     ++G++C   
    KIAA1237   876    CAVN--PCLHNGECVADNtsRGYHCRCPPS----WQGDDC    909  

PF07974.3.ls: domain 1 of 1, from 876 to 909: score 21.8, E = 0.0023
                   *->C....CngshGtCvspngtstpcgkCvCdsgyedkyqGadC<-*
                      C  ++C   +G Cv +n  s+   +C C+++    +qG+dC   
    KIAA1237   876    CavnpCLH-NGECVADNT-SR-GYHCRCPPS----WQGDDC    909  

PF07645.6.ls: domain 1 of 1, from 912 to 949: score 47.9, E = 3.2e-11
                   *->DvDECadgtlhnCdDpdantvCvNtiGSFeCvarkdCpeGYeVpvse
                      Dv+EC +   + C   + +++C+Nt+GSF C     Cp GY+     
    KIAA1237   912    DVNECLS---NPC---PSTATCNNTQGSFICK----CPVGYQ----- 943  

                   nnedgtnC<-*
                      + + C   
    KIAA1237   944 --LEKGIC    949  

PF07645.6.fs: domain 2 of 3, from 912 to 949: score 46.2, E = 2.8e-13
                   *->DvDECadgtlhnCdDpdantvCvNtiGSFeCvarkdCpeGYeVpvse
                      Dv+EC +   + C   + +++C+Nt+GSF C     Cp GY+     
    KIAA1237   912    DVNECLS---NPC---PSTATCNNTQGSFICK----CPVGYQ----- 943  

                   nnedgtnC<-*
                      + + C   
    KIAA1237   944 --LEKGIC    949  

PF00008.17.fs: domain 2 of 3, from 916 to 945: score 24.9, E = 4.5e-06
                   *->CspnngpCsngGtCvdtpggytCeCppGyfll<-*
                      C +n  pC   +tC++t+g++ C+Cp+Gy+l+   
    KIAA1237   916    CLSN--PCPSTATCNNTQGSFICKCPVGYQLE    945  

PF00008.17.ls: domain 2 of 3, from 916 to 949: score 24.1, E = 0.00047
                   *->CspnngpCsngGtCvdtpggytCeCppGyfllytGkrC<-*
                      C +n  pC   +tC++t+g++ C+Cp+G  ++     C   
    KIAA1237   916    CLSN--PCPSTATCNNTQGSFICKCPVG--YQLEKGIC    949  

//