hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-21265226/chunk_1/iprscan-20080501-21265226.nocrc
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Query sequence: KIAA1245
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF06758.4.fs Repeat of unknown function (DUF1220)           412.9   3.6e-121   4
PF06758.4.ls Repeat of unknown function (DUF1220)           401.3   1.3e-117   4
PF08182.2.fs Pedibin/Hym-346 family                          14.9     0.0017   3

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF06758.4.fs   1/4     200   266 ..     1    71 []   118.4  2.3e-34
PF06758.4.ls   1/4     200   266 ..     1    71 []   120.4  4.7e-33
PF06758.4.ls   2/4     471   537 ..     1    71 []   118.8  1.4e-32
PF06758.4.fs   2/4     471   537 ..     1    71 []   116.9  6.8e-34
PF06758.4.fs   3/4     745   807 ..     1    71 []   121.9  2.2e-35
PF06758.4.ls   3/4     745   807 ..     1    71 []   123.8  4.4e-34
PF06758.4.ls   4/4     831   892 .]     1    71 []    38.2  2.6e-08
PF06758.4.fs   4/4     831   867 ..     1    44 [.    55.7  7.4e-16

Alignments of top-scoring domains:
PF06758.4.fs: domain 1 of 4, from 200 to 266: score 118.4, E = 2.3e-34
                   *->EedqaGleppaPRLsreLqeaeEpiEVLQDSLDrcysTpSsshelpD
                      Eed   le++aPR   e+q+aeE+ +V++DSL++c++T+S+sh ++D
    KIAA1245   200    EEDEKVLESSAPR---EVQKAEES-KVPEDSLEECAITCSNSHGPCD 242  

                   SnQpYsstfyslEEqkvglaLDid<-*
                   SnQp++++++++EE+kv++++++d   
    KIAA1245   243 SNQPHKNIKITFEEDKVNSTVVVD    266  

PF06758.4.ls: domain 1 of 4, from 200 to 266: score 120.4, E = 4.7e-33
                   *->EedqaGleppaPRLsreLqeaeEpiEVLQDSLDrcysTpSsshelpD
                      Eed   le++aPR   e+q+aeE+ +V++DSL++c++T+S+sh ++D
    KIAA1245   200    EEDEKVLESSAPR---EVQKAEES-KVPEDSLEECAITCSNSHGPCD 242  

                   SnQpYsstfyslEEqkvglaLDid<-*
                   SnQp++++++++EE+kv++++++d   
    KIAA1245   243 SNQPHKNIKITFEEDKVNSTVVVD    266  

PF06758.4.ls: domain 2 of 4, from 471 to 537: score 118.8, E = 1.4e-32
                   *->EedqaGleppaPRLsreLqeaeEpiEVLQDSLDrcysTpSsshelpD
                      Eed   le+++PR   e+q+aeE+ +V++DSL++c++T+S+sh ++D
    KIAA1245   471    EEDEKVLESSSPR---EMQKAEES-KVPEDSLEECAITCSNSHGPCD 513  

                   SnQpYsstfyslEEqkvglaLDid<-*
                   SnQp++++++++EE+kv+++L++d   
    KIAA1245   514 SNQPHKNIKITFEEDKVNSSLVVD    537  

PF06758.4.fs: domain 2 of 4, from 471 to 537: score 116.9, E = 6.8e-34
                   *->EedqaGleppaPRLsreLqeaeEpiEVLQDSLDrcysTpSsshelpD
                      Eed   le+++PR   e+q+aeE+ +V++DSL++c++T+S+sh ++D
    KIAA1245   471    EEDEKVLESSSPR---EMQKAEES-KVPEDSLEECAITCSNSHGPCD 513  

                   SnQpYsstfyslEEqkvglaLDid<-*
                   SnQp++++++++EE+kv+++L++d   
    KIAA1245   514 SNQPHKNIKITFEEDKVNSSLVVD    537  

PF06758.4.fs: domain 3 of 4, from 745 to 807: score 121.9, E = 2.2e-35
                   *->EedqaGleppaPRLsreLqeaeEpiEVLQDSLDrcysTpSsshelpD
                      E++q   ++++PR   e+q+aeE+ EV++DSL++c++T+S+sh ++D
    KIAA1245   745    EKVQ---KSSSPR---EMQKAEEK-EVPEDSLEECAITCSNSHGPYD 784  

                   SnQpYsstfyslEEqkvglaLDid<-*
                   SnQp+++t++++EE+kv+++L i+   
    KIAA1245   785 SNQPHRKTKITFEEDKVDSTL-IG    807  

PF06758.4.ls: domain 3 of 4, from 745 to 807: score 123.8, E = 4.4e-34
                   *->EedqaGleppaPRLsreLqeaeEpiEVLQDSLDrcysTpSsshelpD
                      E++q   ++++PR   e+q+aeE+ EV++DSL++c++T+S+sh ++D
    KIAA1245   745    EKVQ---KSSSPR---EMQKAEEK-EVPEDSLEECAITCSNSHGPYD 784  

                   SnQpYsstfyslEEqkvglaLDid<-*
                   SnQp+++t++++EE+kv+++L i+   
    KIAA1245   785 SNQPHRKTKITFEEDKVDSTL-IG    807  

PF06758.4.ls: domain 4 of 4, from 831 to 892: score 38.2, E = 2.6e-08
                   *->EedqaGleppaPRLsreLqeaeEpiEVLQDSLDrcysTpSsshelpD
                      Ee++   +p++PR   +Lqe+eE+ EV+Q+S+D++ysT+S+++e + 
    KIAA1245   831    EEEK---GPVSPR---NLQESEEE-EVPQESWDEGYSTLSIPPERTS 870  

                   SnQpYsstfyslEEqkvglaLDid<-*
                      + +        q    a   +   
    KIAA1245   871 VGSSEKGGPRGNRSQAQQGAA--G    892  

PF06758.4.fs: domain 4 of 4, from 831 to 867: score 55.7, E = 7.4e-16
                   *->EedqaGleppaPRLsreLqeaeEpiEVLQDSLDrcysTpSsshe<-*
                      Ee++   +p++PR   +Lqe+eE+ EV+Q+S+D++ysT+S+++e   
    KIAA1245   831    EEEK---GPVSPR---NLQESEEE-EVPQESWDEGYSTLSIPPE    867  

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